Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1192
         (716 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ278684-2|CAB99192.1|  989|Drosophila melanogaster endonuclease...    47   2e-05
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros...    32   0.90 

>AJ278684-2|CAB99192.1|  989|Drosophila melanogaster
            endonuclease/reverse transcriptase protein.
          Length = 989

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 22/63 (34%), Positives = 33/63 (52%)
 Frame = +1

Query: 520  LWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPT 699
            +W  R  +   GR T + I P L +W + +   + + +TQ LT HGCF  +L R     T
Sbjct: 852  VWQTRWQESQRGRWTYKLI-PQLTEWADCEHKTVDYHMTQFLTDHGCFRGYLCRFRHVDT 910

Query: 700  AEC 708
            A+C
Sbjct: 911  AQC 913


>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
            Drosophila melanogasterDNA for type I retrotransposable
            element  R1Dm.  ).
          Length = 1021

 Score = 31.9 bits (69), Expect = 0.90
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 523  WSRRLADPSA-GRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPT 699
            W  R  D S  GR T   I  V + + +   G  + R + +LTGHG F  FLH      T
Sbjct: 894  WQNRWDDDSEPGRVTHRFIPYVTLAYRDPSFG-FSMRTSFLLTGHGSFNAFLHGRALSDT 952

Query: 700  AEC 708
              C
Sbjct: 953  TAC 955


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,153,348
Number of Sequences: 53049
Number of extensions: 666458
Number of successful extensions: 1418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)