Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1192
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.7  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   2.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 708 ALCRRLGCDPVQELTETTMPSEHLRKPESEASSVTIH 598
           ALC+ LG   VQ+++ T    + + +   +   +T H
Sbjct: 133 ALCKELGISVVQKVSHTLYKLDEIIERNGDKPPLTYH 169


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +2

Query: 299 RFPIDRYSIKAL*LYVLQ-ITRWLNEFLNNFVYIF--NCLHTYVIKPQSWLNY 448
           RF ++  + K L + V   I  WL  F    V  F  NC+H  V     WL Y
Sbjct: 448 RFRMETKAAKTLGIIVGGFILCWLPFFTMYLVRAFCRNCIHPTVFSVLFWLGY 500


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
 Frame = +2

Query: 362 WLNEFLNNFVYIF--NCLHTYVIKPQSWLNY 448
           WL  F    V  F  NC+H  V     WL Y
Sbjct: 22  WLPFFTMYLVRAFCRNCIHPTVFSVLFWLGY 52


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 392 YIFNCLHTYVIKPQSWLN 445
           +I  CL TY+I   ++LN
Sbjct: 285 FIRGCLQTYLINASTYLN 302


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 392 YIFNCLHTYVIKPQSWLN 445
           +I  CL TY+I   ++LN
Sbjct: 323 FIRGCLQTYLINASTYLN 340


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 362 WLNEFLNNFVYIF 400
           W+N  +N F+Y F
Sbjct: 349 WINSAINPFIYAF 361


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 372 SF*IILFTYLIAYILML 422
           SF I++FTY+I  I ++
Sbjct: 412 SFFIVIFTYIIILITLV 428


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 198 SSNITNSLTNLLPIL 154
           +SN+TN  TNL  IL
Sbjct: 953 ASNVTNVTTNLTTIL 967


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,311
Number of Sequences: 438
Number of extensions: 4619
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)