Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1190
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0570 + 4026889-4027537,4028340-4028689,4029258-4029433,402...    28   4.3  
04_03_0790 - 19678344-19678438,19678783-19679001,19679512-19679551     27   5.6  

>06_01_0570 +
           4026889-4027537,4028340-4028689,4029258-4029433,
           4029593-4029659,4029746-4029780,4030084-4030186,
           4031606-4031699,4031764-4031813,4031889-4032000,
           4032275-4032401,4032491-4032941
          Length = 737

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 163 SLVFFNKKSILEMIFHYWIIFLFLVFKSHCFDVGRTSC 276
           SLV F    +L ++    + FLFLV+   CFD+ +  C
Sbjct: 448 SLVHFATTRMLNLV----LPFLFLVYDLDCFDLSKLEC 481


>04_03_0790 - 19678344-19678438,19678783-19679001,19679512-19679551
          Length = 117

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 344 WGDRCNYTETFEFL-SKGGWYIYVXDVY 424
           W    +  E FE L +K GWY+Y  D Y
Sbjct: 56  WQSIVDARELFELLGTKSGWYLYELDSY 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,285,094
Number of Sequences: 37544
Number of extensions: 216016
Number of successful extensions: 355
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)