Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1190
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U28735-4|AAF99953.1|  488|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U97189-2|AAC48165.2|  336|Caenorhabditis elegans Serpentine rece...    27   6.6  

>U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical
           protein B0244.7 protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +1

Query: 115 YIIIIPRDDPSKRSLLSLVFFNKKSILEMIFHYWIIFLFLVFKSHCFDVGRTSCESARVG 294
           YI I+ R   +  S+L+ +F     I    F++W+I LF++F+   F     S     VG
Sbjct: 87  YIFILSRAVSASMSILA-IFLLPVIIFLTHFNFWVIALFIIFEMLSF----LSFIGGMVG 141

Query: 295 TTTPSISAV 321
           TT     AV
Sbjct: 142 TTLTIYIAV 150


>U28735-4|AAF99953.1|  488|Caenorhabditis elegans Hypothetical
           protein F48E3.2 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/39 (38%), Positives = 28/39 (71%)
 Frame = +2

Query: 74  LRGVRVILKQNLIFILS*YLAMILRSVACFHSFFLIKNP 190
           L G++ IL QN++ +++  +++I  SVACF + FL ++P
Sbjct: 168 LFGMQSILGQNIVGLIA--VSIIPSSVACFLTVFLKESP 204


>AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical
           protein Y119C1B.5 protein.
          Length = 754

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 169 VFFNKKSILEMIFHYWIIFLFLVFKSHCFDVGRTSCESARV 291
           V + K  ILE++   WI    +V      D GRT  E  R+
Sbjct: 290 VLWRKLRILELLTFTWITMFLMVLYVELIDKGRTWSEVGRI 330


>Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical
           protein Y48E1B.8 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 151 RSLLSLVFFNKKSILEMIFHYWIIFLFLVFK 243
           +SLL+L+FFN+ S++ + + +W +   LV +
Sbjct: 8   QSLLALIFFNRLSLV-IFYSFWFLIGLLVLR 37


>U97189-2|AAC48165.2|  336|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 15 protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +1

Query: 118 IIIIPRDDPSKRSLLSLVFFNKKSILEMIFHYWIIFLFLVFKSHCFDVGRTSCESARVGT 297
           +  I RD+      +S VFF K    +M   +W++F FL   +  F+      +S R+  
Sbjct: 158 VFFIYRDEKFDDGSISFVFFPKTLAPKMFTFFWVMF-FLNLINFTFN-SYLLRQSIRLKV 215

Query: 298 TTPSISAVKQQ 330
           +T S++   Q+
Sbjct: 216 STSSLATKYQR 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,722,892
Number of Sequences: 27780
Number of extensions: 191662
Number of successful extensions: 402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)