Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1189
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,297...    28   5.2  
01_06_1313 - 36212524-36213669                                         28   6.8  
01_06_0574 + 30355217-30355460,30356006-30356130,30356221-30356943     28   6.8  
07_01_0615 + 4551557-4551835                                           27   9.0  

>06_01_0417 -
           2972877-2973876,2973946-2974851,2975823-2976616,
           2977887-2977977,2978305-2978384
          Length = 956

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 36  IQQVFTVHEPDMPWHLHSCFI 98
           ++QV T+   D+P+HL +CF+
Sbjct: 461 VKQVLTLSYNDLPYHLKACFL 481


>01_06_1313 - 36212524-36213669
          Length = 381

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 552 PPDEYSRHSIDCLTHIWTLDRSVAAYL 472
           PP    RHS + L H+WT+   ++AYL
Sbjct: 133 PPLLRRRHSGEPLAHLWTIALLMSAYL 159


>01_06_0574 + 30355217-30355460,30356006-30356130,30356221-30356943
          Length = 363

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 567 GRAGCPPDEYSRHSIDCLTHIWTLDRSVAAY 475
           G+ GC P+E +R+S D  T +  +D ++  +
Sbjct: 221 GQVGCSPNELARYSADGATCVARIDSAIQIF 251


>07_01_0615 + 4551557-4551835
          Length = 92

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 247 AHPVDRISRSSKLLQIVKRWAGRHRTWTDHKSCHRDIH 360
           A PV+R+ + +   Q+ +R  GR   W   +S  RD H
Sbjct: 2   APPVERLKKLTNPAQLARRRHGRAGRWWLTRSSGRDAH 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,230,968
Number of Sequences: 37544
Number of extensions: 375072
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)