Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1187
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 28 0.60
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 28 0.60
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 27 1.4
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 27 1.8
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 26 2.4
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 26 3.2
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 25 4.3
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 5.6
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 7.4
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.4
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 24 9.8
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 24 9.8
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 28.3 bits (60), Expect = 0.60
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 139 CSLNTHFKKKKILSADFRQSNYGIVLKT 56
C LN++F +K ++ DF +NY V T
Sbjct: 2050 CQLNSNFFEKILVDMDFNDNNYRTVANT 2077
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 28.3 bits (60), Expect = 0.60
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = -2
Query: 225 VRTCFKKNFFFSNYNAQNKIVHFEYNNMYVL 133
+RT F +N F SNY +++I+ ++Y+N+ L
Sbjct: 5 IRTLFIRNRF-SNYRLRSQIIKYKYSNVSYL 34
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 234 LPPVRTCFKKNFFFSNYNAQNKIVH 160
LPP TCF+KN F +A +VH
Sbjct: 126 LPPYSTCFEKNITF--LDAATNVVH 148
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 1.8
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -3
Query: 86 PIELRNRAQNIIISCQQPFSFKLRPSIL 3
P+ RN+ +N++ +C+ +F ++PS L
Sbjct: 325 PVFQRNKGRNVLPACRDFAAFDIKPSTL 352
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 26.2 bits (55), Expect = 2.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 127 YSKNIHIIIFKMNNFILSIVVRKKKVFFKASTY 225
Y NI++ FK+ F S V V F+ TY
Sbjct: 62 YENNIYMRTFKLRPFAKSGVTNSSNVVFQMKTY 94
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 3.2
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = -2
Query: 318 TLQTETHYCFMAEIGWVVVPIRADSQEVLPPVRTCFKKNFFFSNYNAQNKIVHFEY 151
T+ +CF +G + P+R +Q++ P++ + F + + Q HF Y
Sbjct: 241 TVSNLKRFCFSESLGHIFAPLRFQNQQL--PLQHVYAFLFSIAYRDNQVDTAHFLY 294
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 91 NPQIIFSSS*SEYSKNIHIIIFKMNNFILSIVVRKK 198
+P+ + + + K++ ++FKMN+ IVV KK
Sbjct: 9 SPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKK 44
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.0 bits (52), Expect = 5.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 258 IRADSQEVLPPVRTCFKKNFFFSNY 184
I+AD+Q++LP + T + F Y
Sbjct: 881 IKADAQKLLPQILTAIHSQYSFRGY 905
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 24.6 bits (51), Expect = 7.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 262 YHHPAYFCHEAVMRFGLKGGAAVVTILETLELIS*GG 372
+ P+ F E V+ L GG AVV + TLE I G
Sbjct: 87 FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 24.6 bits (51), Expect = 7.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 438 AHSPPGVKWLLEPIDIYNVNAPPTLR 361
A PP +K P+DI N++A L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.2 bits (50), Expect = 9.8
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -2
Query: 198 FFSNYNAQNKIVHFEYNNMYVL*ILT 121
FF YN Q++++ NM++ ++T
Sbjct: 774 FFHKYNFQDEVLRMRRRNMFMCALMT 799
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 444 GRAHSPPGVKWLLEPIDIYN 385
G H P V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,233
Number of Sequences: 5004
Number of extensions: 36965
Number of successful extensions: 76
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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