Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1186
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    29   1.0  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    28   1.4  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   7.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   9.5  

>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 796 CSQLRPLETELAPIGPIAPPMFPFIVCTGRV 704
           C +LRP    + P+ P+  P+   IVC G V
Sbjct: 138 CRELRPETRPVDPVSPVVSPVDGRIVCQGVV 168


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 495 LIYSCYSGSVSKETSRNKNKIWIKCRVRFAYMMSTAIMHQSAL 623
           L ++CY  SV   T    N  W+   +   Y  +TAI  Q A+
Sbjct: 379 LYFACYLCSVGVYTGAGLNVTWLSANIAPHYKRATAISLQLAI 421


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 454  FSSANLKFTVSSSTLYIRATVDQFPKKHQEIRIKS 558
            FSS+N    ++SS   I  TV+QF ++   + ++S
Sbjct: 979  FSSSNNLAVITSSLAKIEQTVEQFTEEGFNVNVES 1013


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 22/104 (21%), Positives = 42/104 (40%)
 Frame = +3

Query: 294 LFWLKSGGATKSPLGQLVRKQTDHRTINKKATTSVIEL*NRKDFGNIFKSLRELFIS*PK 473
           L+ L+  G T+S  G+ V           K         N   F    +++R+L      
Sbjct: 58  LYGLRRSGRTRSNPGRYVDTDDQEDVFPSKHRKGTR---NGSSFSR-HRTIRDLDDEAES 113

Query: 474 IHSEFVDLIYSCYSGSVSKETSRNKNKIWIKCRVRFAYMMSTAI 605
           + SE  +   S Y G+  K + + K+  +++  +RF+   S  +
Sbjct: 114 VTSEESESDDSSYGGTPKKRSRQKKSNTYVQDEIRFSSRNSKGV 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,316,557
Number of Sequences: 5004
Number of extensions: 68550
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)