Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1185
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    29   0.47 
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   2.5  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   4.4  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   4.4  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   4.4  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.8  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   5.8  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   7.6  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.6  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    25   7.6  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   7.6  

>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -3

Query: 229  QTARLTPRTPSRRSLRGESKALKRQPSRYGSPSGRPDSAAGVPEYPAGPEPACR 68
            +T+      P + + R  SK L+      GSPS    S A     P  PEPA +
Sbjct: 865  RTSASNESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQKPEPALK 918


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 187 LRGESKALKRQPSRYGSPSGRPDSAA 110
           L   S +  RQP +Y SPSG  +SAA
Sbjct: 608 LNPTSGSFLRQPMQYSSPSGVSESAA 633


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 78  GSGPAGYSGTPAALSGRPDG 137
           G GP G+ G P    G P G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGG 246


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 69  GSGRDTPPTGRSFVTPLQR 13
           G  R+TPP  ++FVT L R
Sbjct: 533 GKDRNTPPMAKTFVTYLHR 551


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = -3

Query: 244 GQHYNQTARLTPRTPSRRSLRGES-----KALKRQPS-RYGSPSGRPDSAAGVPEY 95
           G+ +  + RL  R+PS    R  S     ++ +R  S RY S S  PD  +  P+Y
Sbjct: 104 GRVHGDSGRLRSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDY 159


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -3

Query: 226 TARLTPRTPSRRSLRGESKALKRQPSRYGSPS----GRPDSAAGVPEYPAGPEPACRVGT 59
           + R +P  PS  SLR +S   +   S   +PS    G  ++A+    +P+ P  + ++ T
Sbjct: 586 STRSSPTKPSTTSLRSQSLVNRFASSTLKAPSSSSKGVSNAASSKQSFPSSPSISKKLET 645

Query: 58  RYTANRSL 35
              + + L
Sbjct: 646 SRLSTKKL 653


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 211 PRTPSRRSLRGESKALKRQPSRYGS-PSGRPDSAAGVP 101
           P TPS  +   +S    R+PS+  S PS    ++A VP
Sbjct: 495 PTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVP 532


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 162 NVSRLGTAARQAAQTVPLVSRNTPLDQNQPAGSGRDTPPTGRSFVTP 22
           ++S +GT A  +    P V+   P     PA      PP  RS ++P
Sbjct: 709 SMSPMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISP 755


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = -1

Query: 321 RLPCTLTPDVRSSLRSEPG*GRGVTAVNTTTRRRGSPQGRPADGAFEANRRL*NVSRLGT 142
           R+    TP VRS+ R+       +  V  T     S    P      ANRR    +R+  
Sbjct: 500 RVAVPSTPSVRSASRAMTSPRTPLPRVKNTQNPSRSISAEPPSATSTANRRHPTANRIDI 559

Query: 141 AAR 133
            AR
Sbjct: 560 NAR 562


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 141 AARQAAQTVPLVSRNTPLDQNQPAGSGRDTPPTGRSFVTPL 19
           +A +  Q+VP VS  +P     P  S    PP G    +P+
Sbjct: 104 SADENQQSVPTVSIASPSTPELPPSSSPLLPPNGSESSSPI 144


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -2

Query: 341 FRTHPLNDSPALLHPTSDPL*GQNPDEVGGLPRSTLQPDGAAHP 210
           FR  P+ D+P L            P  VGG  R    PDG  HP
Sbjct: 294 FRNCPMADAPMLQVLEKAAQTVFVPLTVGGGIRDVSDPDGTFHP 337


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 235 SVDRGNPPTSSGF*PQRGSDVGCKSAGESFSGWVLKS 345
           S     P  SSGF    G     KS GE+ SG  LK+
Sbjct: 241 SASANKPSKSSGFHINNGKSKEEKSHGENESGGKLKN 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,565
Number of Sequences: 5004
Number of extensions: 36810
Number of successful extensions: 119
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)