Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1185
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67952-2|AAB07576.1|  139|Caenorhabditis elegans Hypothetical pr...    31   0.41 
AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical ...    30   0.72 
Z75531-11|CAN86615.1|  129|Caenorhabditis elegans Hypothetical p...    29   1.3  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z83226-2|CAB05723.1|  211|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z77658-12|CAE17787.2|  103|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z77658-6|CAB01155.1|  103|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z69662-3|CAA93502.1|  449|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z22177-7|CAA80149.1|  171|Caenorhabditis elegans Hypothetical pr...    27   6.7  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    27   6.7  
Z66498-1|CAA91290.1|  304|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical...    27   8.9  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U67952-2|AAB07576.1|  139|Caenorhabditis elegans Hypothetical
           protein F39B3.3 protein.
          Length = 139

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -3

Query: 223 ARLTPRTPSRRSLRGESKALKRQPSRYGSPSGRPDSAAGVPEYPAGP---EPACRVGTRY 53
           +R  P T    S+R  S+ ++R P RYGS      ++ G P         + + R G RY
Sbjct: 58  SRSHPTTDPSHSVRRSSR-IRRVPDRYGSSVEHLSTSTGTPRGSTSTQLGQASTRNGNRY 116

Query: 52  TAN 44
           TA+
Sbjct: 117 TAS 119


>AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical
           protein C30F12.5 protein.
          Length = 392

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -2

Query: 356 RGPKDFRTHPLN----DSPALLHPTSDPL*GQNPDEVGGLPRSTLQPDGAAHP 210
           +G KD+    +     D P + HP   PL   +P   G +PR+ L P+GA  P
Sbjct: 303 KGQKDYENGSMGQLPIDEPRIGHPLYSPLPPIDPT-YGTIPRARLAPNGAPPP 354


>Z75531-11|CAN86615.1|  129|Caenorhabditis elegans Hypothetical
           protein C54D10.13 protein.
          Length = 129

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +1

Query: 232 CSVDRGNPPTSSGF*PQRGSDVGCKSAGESFSGWVLKS 345
           CS DR N    S F  QRG  V  KS  E+FS  ++K+
Sbjct: 82  CSQDRCNNERDSFF-HQRGGGVSWKSGAETFSTSIIKT 118


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 389 RLNDLQVLRADRGPKDFRTH-PLNDSPALLHPTSDPL 282
           RL+D+ + R+DR  +  R+H  +  SP L H TS  L
Sbjct: 210 RLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTSSTL 246


>U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical
           protein C37A2.3 protein.
          Length = 442

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -1

Query: 309 TLTPDVRSSLR-SEPG*GRGVTAVNTTTRRRGS 214
           ++T D+ SSL  SEP  G  V+AV+T  RR+GS
Sbjct: 170 SITGDLVSSLAVSEPHAGSDVSAVHTHARRQGS 202


>Z83226-2|CAB05723.1|  211|Caenorhabditis elegans Hypothetical
           protein F43D2.3 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 232 NQTARLTPRTPSRRSLRGESKALKRQPSRYGSPSGRPDSAAGVPEYPA-GPEPACRVGTR 56
           NQT   T  +P RRS+R     ++R P RYGS    P ++ G       GP+P  R  TR
Sbjct: 43  NQTTS-TNMSP-RRSVR-----IRRMPVRYGSTMQPPATSNGQRNTRGQGPKPKGRAATR 95


>Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical
           protein K02B12.8 protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 247 RGQHYNQTARLTPRTPSRRSLRGESKALKRQPSRYGSPSG 128
           R  H+ Q +R+TP   +RRS  G  +   ++  R  S  G
Sbjct: 330 RVHHFKQNSRITPIAQNRRSAAGFDRQQIQEMRRISSQPG 369


>Z77658-12|CAE17787.2|  103|Caenorhabditis elegans Hypothetical
           protein F14D7.10 protein.
          Length = 103

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = -3

Query: 202 PSRRSLRGESKAL-KRQPSRYGSPSGRPDSAAGVPEYPAGPEPACRVGTRYTANRSLFRN 26
           P+    R E KA    QPS  G  S     AAG P   +  E   +    YTA+   F N
Sbjct: 24  PTEEQARAELKAAGMSQPSIDGIFSLIQRFAAGFPMVQSNKEATDKFIAEYTADAQNFMN 83

Query: 25  SFAA 14
           S  A
Sbjct: 84  SMPA 87


>Z77658-6|CAB01155.1|  103|Caenorhabditis elegans Hypothetical
           protein F14D7.7 protein.
          Length = 103

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = -3

Query: 202 PSRRSLRGESKAL-KRQPSRYGSPSGRPDSAAGVPEYPAGPEPACRVGTRYTANRSLFRN 26
           P+    R E KA    QPS  G  S     AAG P   +  E   +    YTA+   F N
Sbjct: 24  PTEEQARAELKAAGMSQPSIDGIFSLIQRFAAGFPMVQSNKEATDKFIAEYTADAQNFMN 83

Query: 25  SFAA 14
           S  A
Sbjct: 84  SMPA 87


>Z69662-3|CAA93502.1|  449|Caenorhabditis elegans Hypothetical
           protein F56D5.3 protein.
          Length = 449

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 260 VGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAV 150
           V  + R+T Q  G   P  A+P  P + + G   SAV
Sbjct: 334 VDAITRNTTQGIGLGRPATAEPDLPKKLLNGDVPSAV 370


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +3

Query: 60   VPTRQAGSGPAGYSGTPA--ALSG--RPDGLPYRDG 155
            VP +Q  SG  GY G P    + G    DG P RDG
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +3

Query: 60   VPTRQAGSGPAGYSGTPA--ALSG--RPDGLPYRDG 155
            VP +Q  SG  GY G P    + G    DG P RDG
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421


>Z22177-7|CAA80149.1|  171|Caenorhabditis elegans Hypothetical
           protein ZK512.8 protein.
          Length = 171

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 317 SPALLHPT--SDPL*GQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVS 147
           SP   H +  S+P   +  DE+  L R  +  D   HP + +  +P  + E S TSA S
Sbjct: 43  SPVSTHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHS 101


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +3

Query: 60   VPTRQAGSGPAGYSGTPA--ALSG--RPDGLPYRDG 155
            VP +Q  SG  GY G P    + G    DG P RDG
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420


>Z66498-1|CAA91290.1|  304|Caenorhabditis elegans Hypothetical
           protein M195.1 protein.
          Length = 304

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 16/28 (57%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 78  GSGPAGYSGTPAALSGRP--DGLPYRDG 155
           GSGPAG  GTP    GR   DG P  DG
Sbjct: 113 GSGPAGPPGTPGE-DGRDGNDGQPGPDG 139


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = -2

Query: 350 PKDFRTHPLND-SPALLHPTSDPL*GQNPDEVGGLPRSTLQPDGAAHPKDAQPTE-PSRR 177
           P      P N+ SP  + P+ +P     P      P    QP G   P    P+E P   
Sbjct: 77  PTSVVPQPSNEPSPGTVAPSDEPSPSGPPSPGPVNPSEDPQPSGPPSPGPVDPSEDPQPS 136

Query: 176 IEGSE 162
           +E SE
Sbjct: 137 VEPSE 141


>AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical
           protein Y56A3A.31 protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 66  TRQAGSGPAGYSGTPAALSGRP 131
           +  AGS P G +GTP+A S  P
Sbjct: 23  SNSAGSSPPGAAGTPSAASQTP 44


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
            protein Y46B2A.3 protein.
          Length = 1145

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 16/58 (27%), Positives = 22/58 (37%)
 Frame = +1

Query: 100  PGHQRHCLGGLTGCRTETADVSEPSIRLEGSVGWASLG*AAPSGCSVDRGNPPTSSGF 273
            P H+    G   G    T D S    R   + GW +      SG S      PT++G+
Sbjct: 868  PTHRPTTAGWTNGANGTTRDTSRGFTRRPTTAGWTNGANGTTSGTSRGFTQRPTAAGW 925


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,807,231
Number of Sequences: 27780
Number of extensions: 240057
Number of successful extensions: 990
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)