Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1183
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    31   0.44 
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 64  PNPDHAGASHRRRPRHVLTDPSD 132
           PN DH G +H RR R+   DPSD
Sbjct: 242 PNVDHIGHNHHRRKRNHDDDPSD 264



 Score = 29.9 bits (64), Expect = 1.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 64  PNPDHAGASHRRRPRHVLTDPSD 132
           PN DH G +HRR+  H   DPSD
Sbjct: 198 PNVDHTGHNHRRKRNHD-DDPSD 219



 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +1

Query: 64  PNPDHAGASHRRRPRHVLTDPSD 132
           PN DH G +HRRR R    DPSD
Sbjct: 287 PNVDHTGHNHRRR-RDQDDDPSD 308



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 64  PNPDHAGASHRRRPRHVLTDPSD 132
           PN DH G +HR + R +  DPSD
Sbjct: 132 PNVDHTGHNHRVK-RSIDDDPSD 153


>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -2

Query: 421 GQVGEQRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEKIRRETQRADAW 242
           G+VGE++ S++  D++  + AP  E  + +     NE     E    EK+  E ++A A 
Sbjct: 164 GEVGEKKESEQPTDMVEPSSAPTTEETETE-----NEEEDDKEKTDKEKLDAEKEKALAE 218

Query: 241 VRL 233
            RL
Sbjct: 219 KRL 221


>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -2

Query: 421 GQVGEQRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEKIRRETQRADAW 242
           G+VGE++ S++  D++  + AP  E  + +     NE     E    EK+  E ++A A 
Sbjct: 164 GEVGEKKESEQPTDMVEPSSAPTTEETETE-----NEEEDDKEKTDKEKLDAEKEKALAE 218

Query: 241 VRL 233
            RL
Sbjct: 219 KRL 221


>AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical
           protein Y48C3A.14 protein.
          Length = 855

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 312 SFAKQLLLSC*VSFGGARAVVSKSHPSWLSLCSPTCPGETG 434
           S +   +  C    GG   + ++SHP W   C+  CP   G
Sbjct: 710 SISSNGVCGCLQDCGGVMLLDTQSHPKWRMTCN-KCPSVVG 749


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,886,891
Number of Sequences: 27780
Number of extensions: 185957
Number of successful extensions: 563
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)