Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1182
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543...    30   1.7  
01_06_1749 - 39636951-39638102                                         29   5.1  
01_05_0677 - 24202037-24202444,24202499-24202795,24202960-242030...    28   6.8  
07_03_1665 + 28480745-28480916,28481347-28481612                       28   9.0  

>04_03_0535 -
           16850704-16853001,16854055-16854115,16854228-16854323,
           16854394-16854521,16855016-16855067,16855182-16855274,
           16855473-16855590,16856456-16856609,16857512-16857643,
           16859136-16859216,16859353-16859507,16860118-16860343,
           16860423-16860507,16860593-16860689,16861785-16861949,
           16862046-16862121,16863041-16863103,16863193-16863359,
           16863495-16863669,16863743-16863835,16864694-16864810,
           16865589-16865778,16866092-16866126
          Length = 1618

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 533 LETLLIYFIKLNCYLYTMVTDI-QGAYFVFI 444
           L+ LL+YFI LNCY   +  D+ +G Y  FI
Sbjct: 264 LKALLLYFIILNCYGLHVTLDLSKGVYAKFI 294


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 284 SSIVTTAAPPFKPKRITA 337
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>01_05_0677 -
           24202037-24202444,24202499-24202795,24202960-24203009,
           24204534-24204589,24205751-24206040,24206100-24206488,
           24210578-24210818
          Length = 576

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/52 (23%), Positives = 32/52 (61%)
 Frame = +2

Query: 53  KKIIDMSIQIDLNIIVSFKEYGSKSALNKG*YLTCYLSKMSFRRVL*LPMEY 208
           + + D+   + ++ IV+ K++ ++  + +  Y TC +S+  FRR+L + +++
Sbjct: 409 ESLYDLFKTVGIDRIVTLKQHYNEDLIRQF-YATCSISRRQFRRLLNIRLDF 459


>07_03_1665 + 28480745-28480916,28481347-28481612
          Length = 145

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 248 SKVRLPALIIVDSSIVTTAAPPFKPKRITA 337
           SK+ L  + +   S+V +AAPP +P RI A
Sbjct: 3   SKILLVVIGVAVVSVVASAAPPAQPPRIQA 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,254,498
Number of Sequences: 37544
Number of extensions: 281205
Number of successful extensions: 490
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)