Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1180
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0609 + 24312528-24313352 31 1.2
01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330... 30 1.6
06_03_0830 + 25159758-25162460 30 2.1
09_02_0060 + 3729613-3729863,3730377-3730392 29 2.8
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 29 3.7
02_04_0123 + 19961904-19962096,19962836-19963029,19963334-199634... 29 4.9
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805... 28 6.4
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 28 8.5
07_01_0307 - 2194796-2199274 28 8.5
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 28 8.5
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 28 8.5
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 28 8.5
>02_04_0609 + 24312528-24313352
Length = 274
Score = 30.7 bits (66), Expect = 1.2
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Frame = -3
Query: 561 GSIKHTIMLSTSNRNIPLSSTVLVGVIPLNT--------INMDLNSLISKFAVPRVMVTL 406
G+I ++ S+S + LS+ +LVG IP N +++D N+L +T
Sbjct: 137 GAIPVSLTNSSSLSYLDLSTNLLVGAIPANISLLSNLEYLDLDQNNLTGTVLQTIGDITS 196
Query: 405 LDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSSIDSG 286
L++L F + S ++P K+ +P L++ L +++ G
Sbjct: 197 LEILYLFQNQL--SGSIPDKIWQLPNLMQLVLGENNLSGG 234
>01_06_1129 +
34732007-34732091,34732814-34732934,34733012-34733083,
34733168-34733242,34733348-34733419,34733514-34733675,
34733780-34733854,34733932-34734003,34734089-34734160,
34734245-34734313,34734388-34734462,34734557-34734628,
34734732-34734866,34734946-34735415,34735490-34735648,
34735741-34735880,34735974-34736193,34736305-34736540,
34736627-34737130
Length = 961
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -3
Query: 576 SGPALGSIKH-TIMLSTSNRNIPLSSTV--LVGVIPLNTINMDLNSLISKFAVPRVMVTL 406
SGP GSI + + ++ S + L+ TV L L +++ N+ +S A PR TL
Sbjct: 253 SGPVPGSIANLSRLMELSLASNQLNGTVPDLTSANALTYVDLSNNNFMSSPA-PRWFSTL 311
Query: 405 LDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSS 298
+ F D + T+P + P L + SL +S
Sbjct: 312 TSLTTLFMDSDHLTGTIPSALFSFPQLQQISLAKNS 347
>06_03_0830 + 25159758-25162460
Length = 900
Score = 29.9 bits (64), Expect = 2.1
Identities = 29/103 (28%), Positives = 42/103 (40%)
Frame = +2
Query: 104 WTNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAE 283
W + ++ ASP E S ++R L + V+ A LS +
Sbjct: 554 WKGSAATSAFRPASPRCTPDGEKSVSASSQRTGNALFDLNVSESDNATAGEPLSAAIL-- 611
Query: 284 KPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNV 412
PLS D + K+ S VG NS+ L + AA T+SNV
Sbjct: 612 -PLSSDIVRKDASATVGLNSLELD--LNCPCDDEEAAITTSNV 651
>09_02_0060 + 3729613-3729863,3730377-3730392
Length = 88
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 236 ANWPPGRYSALRLIVCSRLIPPIRC 162
A WPP RY + R C R +P + C
Sbjct: 35 AKWPPSRYRSYR-ATCCRAVPSLLC 58
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 215 YSALRLIVCSRLIPPIRC-SALNWATPRLR 129
Y L CS +PP+RC L W+ PR++
Sbjct: 15 YPLLAPPTCSSRLPPLRCFVGLRWSAPRIQ 44
>02_04_0123 +
19961904-19962096,19962836-19963029,19963334-19963465,
19963921-19964038,19964248-19964484,19964576-19964658,
19964777-19965004,19965394-19965470,19965590-19965626,
19965786-19965952,19966156-19966234,19966301-19966378,
19967459-19967575,19967999-19968379,19968453-19968590,
19968680-19968769,19968832-19968840
Length = 785
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = -2
Query: 697 VWSALIAVKLFSNKNLLSCLVFRVHQSAVGFAQFAHLSFGQRPRVGVDQAHNHAVDFESQ 518
V S+ A ++ + +L L+ R SA+ AQ F P V DQA N+AVD Q
Sbjct: 40 VVSSSTATRIHLFREILPPLLSRGSDSALFVAQLIRFIFRTLP-VYDDQASNNAVDDLVQ 98
Query: 517 HTIVFYSFSGRYTF 476
+ +F G + F
Sbjct: 99 LALRKPTFLGHFAF 112
>04_04_1401 +
33279092-33279286,33280223-33280306,33280459-33280524,
33280945-33281028,33281181-33281246,33281719-33281802,
33281955-33282020,33282323-33282388,33282667-33282726,
33282805-33282888,33282968-33283111,33283552-33283586,
33283694-33283746,33283828-33283928,33284516-33284974
Length = 548
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 179 SDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGT 358
SD+NK + KL + ++ R GDNK +K +D + +N + L
Sbjct: 202 SDDNKSDSCKLRDKTTSDDRSKSGDNKYDSCKTRDKKPIVDLADEFENNTIKKKITLLSE 261
Query: 359 VYDY 370
YD+
Sbjct: 262 KYDF 265
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +2
Query: 107 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 286
T N+ L + SP+ S+ +E D KR+ L I +G + + +E+
Sbjct: 154 TGLHNIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEIRLVILNGGSMIYYSNPSEQ 213
Query: 287 PLSID 301
P S+D
Sbjct: 214 PFSVD 218
>07_01_0307 - 2194796-2199274
Length = 1492
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 587 EVRELRKSNCTLVYTKNEAAQQVFIGK 667
E+RELR N V+TK EAA+ + K
Sbjct: 798 ELRELRIDNLEKVHTKEEAAEAKLLSK 824
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 76 CFARTDLSLLDECIKFKFLNRGVAQ 150
C ++ +S++DEC+K FL +AQ
Sbjct: 1964 CSSKDSVSVIDECLKLLFLFHSLAQ 1988
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +2
Query: 116 LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 295
++ + L + LG E + DE RL + + A+ + GDN M+ ++ +
Sbjct: 450 ISKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDTHVR 509
Query: 296 IDDIVKEGS 322
+ D+V++ +
Sbjct: 510 LHDVVRDAA 518
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 570 PALGSIKHTIMLSTSNRNIPLSSTVLVGV 484
P++ + I LSTS RNI S T +G+
Sbjct: 708 PSMAADSDQIELSTSTRNISFSDTAYIGI 736
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,081,445
Number of Sequences: 37544
Number of extensions: 400383
Number of successful extensions: 1117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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