Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1179
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   1.5  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    24   5.9  
SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom...    23   7.9  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    23   7.9  

>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 185 PSLFVFTCRQPPVPYRSLP 129
           P+ F FTC  PP+  ++LP
Sbjct: 282 PNSFHFTCIDPPIEEKNLP 300


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 78  SHQTGGHEHWSHDAALVGCTEVSEV 4
           +H   GH+H SHD++    +E + +
Sbjct: 26  NHDHHGHDHHSHDSSSNSSSEAARL 50


>SPBC31F10.02 |||thioesterase superfamily
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 15  LQCNLLVQHHETNARGRQSGGFI 83
           ++C+L +Q H  N  G   GG I
Sbjct: 45  VECSLKLQKHHLNRMGNLHGGCI 67


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 95  TRKKPKKQ*KEVAVT 139
           T KKPK   KE+AVT
Sbjct: 605 TEKKPKNASKEIAVT 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 845,828
Number of Sequences: 5004
Number of extensions: 11092
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)