Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1179
         (309 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0880 + 6903535-6903932,6904931-6905022,6905601-6905680,690...    26   6.9  
05_04_0083 + 17780665-17780764,17781070-17781124,17781193-177813...    25   9.2  

>01_01_0880 +
           6903535-6903932,6904931-6905022,6905601-6905680,
           6905885-6905926,6906001-6906128,6906530-6906710,
           6906801-6906979,6907469-6907717,6907950-6908193
          Length = 530

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
 Frame = -2

Query: 155 PPVPYRSLP--LPFTAFLASSA*A---RANKATRLAATSIG 48
           PP P+ ++P  LP T+  ++SA A    +N+  R+AA + G
Sbjct: 45  PPAPHLAVPLILPITSSSSASAAAASPESNRGARMAAAASG 85


>05_04_0083 +
           17780665-17780764,17781070-17781124,17781193-17781313,
           17781361-17781429,17782047-17782274,17782477-17782666,
           17783303-17783694,17784380-17784427,17784816-17785400
          Length = 595

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 24  NLLVQHHETNARGRQSGGFIGPRLRGRSQKSSKRKWQ*PIRNRRLTTSKHE 176
           N  VQH  +NA   ++   +G     R   S   +    +R    TTSK+E
Sbjct: 468 NTPVQHSRSNASTPRARNRVGANFDQRRLHSPNHQQSPDLRKEGTTTSKYE 518


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,130,258
Number of Sequences: 37544
Number of extensions: 94356
Number of successful extensions: 288
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)