Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1179
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   2.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   5.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   7.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = -2

Query: 155 PPVPYRSLPLPFTAFLASSA*ARANKATRLAATSIGLM 42
           PP    SLP   T    ++    A  A     T+ GL+
Sbjct: 96  PPASSTSLPATITTTTTTTTTTTATAAATATTTATGLI 133


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 122 FTAFLASSA*ARANKATRLAATSIGLMMLH 33
           FT+ L   A +R  KAT L AT  G   ++
Sbjct: 455 FTSKLFGRALSRRIKATVLFATETGTSQMY 484


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +2

Query: 74  WLYWPS 91
           WL+WPS
Sbjct: 221 WLFWPS 226


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 83  WPSLTRKKPK 112
           WPS +R +PK
Sbjct: 545 WPSYSRDEPK 554


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,547
Number of Sequences: 438
Number of extensions: 832
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)