Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1178
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.081
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   0.43 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   1.3  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   5.3  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    24   7.0  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    24   9.3  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    24   9.3  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    24   9.3  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.081
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 179 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 280
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 28.3 bits (60), Expect = 0.43
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 103 YVARSESIMRDSDVAFSHSPALAIAQVRRNGNRI 2
           Y    ES + D+ +  SH+ A +I Q  R+G R+
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKRL 96


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 257 FPCVPTQSFVDPIHLKICQYPHGGL 183
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 180 SESTVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDV 311
           S +++R  A  + + +  +L  N G+W   TW  +  R W  DV
Sbjct: 160 SPASLRETAAKEYDALTSKLG-NTGDWIYDTWSDNELRTWLHDV 202


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 6   LLPFLLTCAIASAGECENATSLSLMIDSLLATYDRESPPDSKIVVN 143
           L+     C I     C  A  L  + DSL+  Y+  SP   K V+N
Sbjct: 371 LISIFKRCEIMLPKTCTVAHLLDKLFDSLVLKYNTSSP---KFVIN 413


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 104 RSGVSPRLQNRSQPDPAFETC*HS*VRVHRADTGRSSNELD 226
           RS  S R       +P   +     +  H+AD+G S NE++
Sbjct: 11  RSSTSKRSVIDDDSEPELPSMTKEAIASHKADSGSSDNEVE 51


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 210 LQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAGAT 335
           L +N     ++WNAG  G    +  +ER   PD V L  G T
Sbjct: 40  LSVNPFYLSVNWNAGAGGALAVIPLNERGKLPDQVNLFRGHT 81


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 57  NATSLSLMIDSLLATYDRESPPDSKIVV 140
           +A SL L    LLA  DRE+  ++K+++
Sbjct: 270 DAESLKLAASRLLALADREADNNAKLIM 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,163
Number of Sequences: 5004
Number of extensions: 31487
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)