Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1178
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.13
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 0.54
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 0.94
09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715 29 1.6
04_01_0404 - 5297341-5297970,5298304-5299179 29 1.6
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 2.2
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 2.2
09_04_0031 + 13946692-13946774,13947007-13948012 28 2.9
08_02_0049 + 11632868-11632948,11633230-11633322,11634937-116350... 28 2.9
03_02_0412 - 8219712-8219837,8221451-8221543,8221826-8221906 28 2.9
09_04_0028 - 13928542-13929538,13929736-13929818 27 3.8
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 27 5.0
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 5.0
06_01_0277 - 2039129-2040280 27 6.6
04_01_0411 + 5449769-5450662,5450753-5451382 27 6.6
11_04_0167 + 14382976-14385244,14389373-14389842 26 8.7
11_01_0763 + 6402901-6403971,6404581-6404826 26 8.7
10_06_0175 - 11490280-11491000,11491869-11491947,11493613-114938... 26 8.7
09_04_0430 + 17502387-17503505 26 8.7
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 26 8.7
03_05_0529 - 25297909-25298276,25300143-25300413,25300944-253010... 26 8.7
03_03_0256 + 15898702-15900420 26 8.7
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 26 8.7
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.13
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 281 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 117
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 0.54
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 179 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 295
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 0.94
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 194 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 105
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715
Length = 462
Score = 28.7 bits (61), Expect = 1.6
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +2
Query: 158 ETC*HS*VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTLVEA*RGTAKRGCNH 337
E C + V V + D RS L T++ ++ G H A L T +E G R C H
Sbjct: 57 EKCKNVEVNVQQEDQQRSIPLLLYLTSQSDKNGSTPLHFAASLKTSIE---GFTSRLCEH 113
Query: 338 RRGLRSP 358
R +SP
Sbjct: 114 FRPKQSP 120
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -3
Query: 97 ARSESIMRDSDVAFSHSPALAIAQVRRNGN 8
A ++ ++RD DV F+ P+L ++++ GN
Sbjct: 86 AAAQEVLRDKDVTFASRPSLLVSEIFCYGN 115
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 66 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 221
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 308 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 141
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
>09_04_0031 + 13946692-13946774,13947007-13948012
Length = 362
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 256 NGAAALGWCPRNACGGLTWYC*T-RVQPPXGTTL 354
NG AALGW R+ G L+ + T RVQ T+
Sbjct: 4 NGTAALGWAARDTSGHLSPFSFTRRVQQEDDVTI 37
>08_02_0049 +
11632868-11632948,11633230-11633322,11634937-11635030,
11635063-11635292
Length = 165
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 273 WLVSSERLWRPDVVLLNAGA 332
W+ + +RLW P L+ AGA
Sbjct: 16 WVAADDRLWAPKAYLMRAGA 35
>03_02_0412 - 8219712-8219837,8221451-8221543,8221826-8221906
Length = 99
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 273 WLVSSERLWRPDVVLLNAGA 332
W+ + +RLW P L+ AGA
Sbjct: 16 WVAADDRLWAPKAYLMRAGA 35
>09_04_0028 - 13928542-13929538,13929736-13929818
Length = 359
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 256 NGAAALGWCPRNACGGLTWYC*T-RVQPPXGTTL 354
+G AALGW R+A G L+ + T RVQ T+
Sbjct: 4 DGTAALGWAARDASGHLSPFSFTRRVQEEDDVTI 37
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 185 VHRADTGRSSNELDRQTTELERRGMG 262
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 360 RGERSPRRWLHPRLAVPRQASTSVPRTPAKCCSPIPLRSNSVVCRSNSFEDLPVSA 193
R RSPRR P R + + R+PA S P+R++S + D+ +A
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADSRSPADHERRDMSTAA 279
>06_01_0277 - 2039129-2040280
Length = 383
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 327 PRLAVPRQASTSVPRTPAKCCSPIPLR 247
P A PR A+ R +K C P+P R
Sbjct: 148 PHAACPRNATLQQHRLLSKACEPLPRR 174
>04_01_0411 + 5449769-5450662,5450753-5451382
Length = 507
Score = 26.6 bits (56), Expect = 6.6
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = -3
Query: 97 ARSESIMRDSDVAFSHSPALAIAQV 23
A ++ ++RD DV F+ P+L ++++
Sbjct: 86 AAAQEVLRDKDVMFASRPSLLVSEI 110
>11_04_0167 + 14382976-14385244,14389373-14389842
Length = 912
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 6 LLPFLLTCAIASAGECENATSLSLMID 86
LLPFLL A+AG E+AT + D
Sbjct: 10 LLPFLLLLLAAAAGVAESATDAEAIHD 36
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 303 ASTSVPRTPAKCCSPIPLRSNSVVCRSNSFEDLPVSARWTR 181
AST +PR P+ P+P S + + + DLP +AR TR
Sbjct: 365 ASTDIPRRPSHGHIPLPF---SQLDFARTVADLPPTARPTR 402
>10_06_0175 -
11490280-11491000,11491869-11491947,11493613-11493811,
11494003-11494044
Length = 346
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 305 RPPQAFRGHQPSAAAPFPCVPTQSFV 228
+PPQ G P+ P+P PTQ V
Sbjct: 128 QPPQPSLGWSPNLNLPYPLPPTQPTV 153
>09_04_0430 + 17502387-17503505
Length = 372
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 68 TVPHDRLAPRNVRSGVSPRLQNRSQPDPAFETC*HS*VRVHRAD 199
+ P R+AP+ + +P ++ + P P F T S +H+ D
Sbjct: 201 STPPQRVAPQPPATAAAPPIEPVAPPSPTFWTVCMSCCHIHQYD 244
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 306 DVVLLNAGATTXGDYAL 356
D +L NAGAT+ G+YAL
Sbjct: 55 DEILNNAGATSKGNYAL 71
>03_05_0529 -
25297909-25298276,25300143-25300413,25300944-25301019,
25302221-25302311,25304134-25304206
Length = 292
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 228 DKRLS-WNAGE-WGCSTWLVSSERLWRPDVVLLNAGATTXGDYALRAR 365
D+RLS W E G WL+ + P ++ LN G G + L+AR
Sbjct: 182 DQRLSIWILNESCGHFEWLLKPQNNLMPLLLRLNGGKQARGPWILQAR 229
>03_03_0256 + 15898702-15900420
Length = 572
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -3
Query: 166 ACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSH 50
A + C++++ +LES R+Y+ S+++ D++FS+
Sbjct: 301 ASMDCKIKIWDVLESRTCMRTYMGHSKAV---RDISFSN 336
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -1
Query: 333 LH-PRLAVPRQASTSVPRTPAKCCSPIPLR 247
LH PRL P QAS + P P+PLR
Sbjct: 25 LHLPRLRSPHQASRRLSALPFSRALPLPLR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,884,092
Number of Sequences: 37544
Number of extensions: 272486
Number of successful extensions: 960
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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