Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1177
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158...    34   0.098
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978...    27   8.5  

>11_05_0079 +
           18914668-18914753,18915123-18915338,18915829-18915895,
           18916656-18916723,18916999-18917125,18918240-18918339,
           18918405-18918433,18918678-18918730,18919246-18919732
          Length = 410

 Score = 33.9 bits (74), Expect = 0.098
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 227 DFVVPQSINKIPKLLYKININQTKGIRPTGDTSKEKQNCYFYLIPRIFIFIYLL 388
           DF++P  +  +P +L  ++I    G      T  EK   Y YL P + I   +L
Sbjct: 310 DFLLPTVVGCLPMILQNVSIVSLAGAAVASTTGSEKSRIYSYLFPVLGIMSSIL 363


>12_01_0971 -
           9781887-9781924,9782036-9782247,9782327-9784114,
           9784630-9785432
          Length = 946

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 245 SINKIPKLLYKININQTKGIRPTGDTSKEKQNCYFYL 355
           SI++ P +  KI ++  KG+   GD S+++QN   +L
Sbjct: 225 SISRTPNIR-KILVDMLKGLGSNGDVSEDEQNLISHL 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,236,521
Number of Sequences: 37544
Number of extensions: 231064
Number of successful extensions: 442
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)