Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1177
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical ...    27   7.6  
AC024843-4|AAF60842.2|  199|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical protein
            R09E10.5 protein.
          Length = 1459

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 275  KININQTKGIRPTGDTSKEKQNCYFYLIPRI 367
            +I+++   G+RP GD ++E Q    Y +PR+
Sbjct: 1041 QISVSPQYGVRPDGDKTQETQYRQMYNLPRV 1071


>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 203 YYGLADPADFVVPQSINKIPKLLYKININQTKGIRPTGDTSK 328
           Y  LA PA       I  +P L Y+IN NQ  G     DT +
Sbjct: 489 YQQLAAPATRRDADKIVNLPGLTYQINFNQYSGYLNASDTHR 530


>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 203 YYGLADPADFVVPQSINKIPKLLYKININQTKGIRPTGDTSK 328
           Y  LA PA       I  +P L Y+IN NQ  G     DT +
Sbjct: 489 YQQLAAPATRRDADKIVNLPGLTYQINFNQYSGYLNASDTHR 530


>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 203 YYGLADPADFVVPQSINKIPKLLYKININQTKGIRPTGDTSK 328
           Y  LA PA       I  +P L Y+IN NQ  G     DT +
Sbjct: 489 YQQLAAPATRRDADKIVNLPGLTYQINFNQYSGYLNASDTHR 530


>Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical
           protein F49C5.3 protein.
          Length = 551

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -3

Query: 104 TCNLAYKYNSELLIG 60
           TCNL   YNSELLIG
Sbjct: 348 TCNLTDIYNSELLIG 362


>AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical
           protein Y48A6B.8 protein.
          Length = 551

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -3

Query: 104 TCNLAYKYNSELLIG 60
           TCNL   YNSELLIG
Sbjct: 348 TCNLTDIYNSELLIG 362


>AC024843-4|AAF60842.2|  199|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.4 protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -3

Query: 104 TCNLAYKYNSELLIG 60
           TCNL   YNSELLIG
Sbjct: 13  TCNLTDIYNSELLIG 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,389,847
Number of Sequences: 27780
Number of extensions: 236419
Number of successful extensions: 475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)