Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1177
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    25   0.56 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.2  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   6.9  

>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 292 NKRNPSDGGHIKGKTKLLFLFNSENFHIY 378
           +KR P+    ++GK K     NSENF I+
Sbjct: 27  DKRAPTGHQEMQGKEKNSASLNSENFGIF 55


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 364  NFHIYLPFKPSLDFHKSNRSSHFQV 438
            N H+Y P K SLD +    +  +++
Sbjct: 998  NLHVYAPLKISLDVNTPKGNMQWKI 1022


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 350 YLIPRIFIFIYLLNLLWTFTN 412
           Y+IP IFI ++   LL +  N
Sbjct: 229 YVIPLIFIILFYSRLLSSIRN 249


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 364 NFHIYLPFKPSLDFHKSNR 420
           +F  +LP  P+LD+H  +R
Sbjct: 315 DFDEFLPPPPNLDYHDYSR 333


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 350 YLIPRIFIFIYLLNLLWTFTN 412
           Y+IP IFI ++   LL +  N
Sbjct: 229 YVIPLIFIILFYSRLLSSIRN 249


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +2

Query: 20  ESITRYESRPMEKNQ*EAQSCIYRLDCTSNSSSHS 124
           + + + + +  +KN  + Q  I+ LDC+     H+
Sbjct: 1   QKVHQLKKKRRKKNLNQNQMMIWALDCSIKPKDHN 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,673
Number of Sequences: 438
Number of extensions: 2960
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)