Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1176
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    29   0.68 
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   3.6  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   3.6  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   8.4  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    25   8.4  

>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 262 RYNLEHFLRALPMEHTVQNTEGTEVPPQTQ 351
           RY LE  L+  P+EH +  TE  + PP+ +
Sbjct: 85  RYGLEQQLKTNPLEHPILITEPFDNPPENR 114


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 242 APPATGVEFIHTTWSHCGHPQCVSRDLFCYVPSGYGMSSPPRCFPSAMTCPS 87
           A P  G E   T   H  H   + +   CY+ S     S  RCF  +++C S
Sbjct: 684 ADPVVGNED-RTQCDHVFHVNAIFKPSRCYICSESVWGSELRCFHCSISCHS 734


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 17  TSAMPGAEPSRCLSLNTLHKPRLKKDMS*RSGNTVEGSSFHN 142
           TS++P    S     NTL  P L  + S    +TV  + FHN
Sbjct: 740 TSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSRNPFHN 781


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 167 LWKRTVDDRSGSR*YG*ILLRWRAVLW 247
           +WK  V+DRSG +  G     W+  LW
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -1

Query: 417 LTFTLSRTLKNSY*ALTDRLEPLSL--RRDFGSLCILYRMFHGKCSEEMFEIIPASRFY 247
           L  +  RTL NS   L  RL+PL L  R D  SL +    +    +  + + +P    Y
Sbjct: 4   LFLSTPRTLPNSRFLLLRRLQPLGLRYRSDASSLHLFTPTWRDHATNTIIKFVPQQVAY 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,869
Number of Sequences: 5004
Number of extensions: 68963
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)