Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1176
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0384 + 20174441-20175788,20176215-20176858                       29   5.0  
07_01_0297 - 2156960-2157736                                           28   6.6  
03_03_0032 + 13927959-13930040,13930322-13930798                       28   6.6  

>06_03_0384 + 20174441-20175788,20176215-20176858
          Length = 663

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 401 RER*KTRTKHSRIVWNL*VCGGTSVPSVFCTVCSMGSALRKCSR 270
           R R ++R KH  +V    VCG  SV  + C V  +   + +C +
Sbjct: 274 RTRTRSRRKHLSVVTVAVVCGVVSVAMLLCLVGCVACGVLRCRK 317


>07_01_0297 - 2156960-2157736
          Length = 258

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -2

Query: 311 TVCSMGSALRKCSRLYRHLVFTIAPPATGVEF----IHTTWSHCGHPQCVSRDLFCYVPS 144
           T+C   +A+RK +     LV  +    +GV F    +H+TW       C +RD+  Y   
Sbjct: 169 TMCFGENAVRKIAVCSPDLVAAVIA-GSGVFFYRPGMHSTWLFASGGPCFARDIAYYNGK 227

Query: 143 GYGMSSPPRCF 111
            Y +SS    F
Sbjct: 228 LYSISSDGELF 238


>03_03_0032 + 13927959-13930040,13930322-13930798
          Length = 852

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 296 GSALRKCSRLYRHLVFTIAPPA 231
           GSALR  SRL+R LV  +  PA
Sbjct: 163 GSALRSSSRLFRRLVHALDDPA 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,071,321
Number of Sequences: 37544
Number of extensions: 527911
Number of successful extensions: 1255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)