Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1176
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   2.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   2.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.2  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.0  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 144 GWYVAKKISGNALWMTAVAPGSMDEFYSGGGRCYGKNEM 260
           GW +  +I  N L    + PG++  +   G +  G NE+
Sbjct: 13  GWQIRDRIGDNELEERIIYPGTL--WCGHGNKSSGPNEL 49


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 144 GWYVAKKISGNALWMTAVAPGSMDEFYSGGGRCYGKNEM 260
           GW +  +I  N L    + PG++  +   G +  G NE+
Sbjct: 18  GWQIRDRIGDNELEERIIYPGTL--WCGHGNKSSGPNEL 54


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 144 GWYVAKKISGNALWMTAVAPGSMDEFYSGGGRCYGKNEM 260
           GW +  +I  N L    + PG++  +   G +  G NE+
Sbjct: 18  GWQIRDRIGDNELEERIIYPGTL--WCGHGNKSSGPNEL 54


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = +3

Query: 3    TVAHGLQQCQGQSQAAAYRLILSTSLV*RRTCHSARETPWRGAHSITGWYVAKKISGNAL 182
            +V  G QQ   Q Q     +IL + L+  +T H  +  P       TG  V  ++     
Sbjct: 1223 SVVLGKQQ-PSQQQTQQQPIILPSQLLNIKTLHGLKVIPTPAGLKTTGAAVYARVIAPTT 1281

Query: 183  WMTAVAPGSMDE 218
              ++ +PG+  +
Sbjct: 1282 ITSSQSPGNQQQ 1293


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -2

Query: 374 HSRIVWNL*VCGGTSVPSVFCTVCSMGSALRKCSRLYRHLVFTIAPPATGV 222
           H+   + L  CG   +   FC +    S L   +RL +  VF +A  A GV
Sbjct: 39  HTTNAFCLPFCGPNVINPFFCDMSPSLSLLCADTRLNKLAVFIVA-GAVGV 88


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 374 HSRIVWNL*VCGGTSVPSVFCTVCSMGSALRKCSRLYRHLVFTIAPPATGV 222
           H+   + L  CG   +   FC +  + S +   +RL +  VF +A  A GV
Sbjct: 38  HTTNAFCLPFCGPNVINPFFCDMSPLLSLVCADTRLNKLAVFIVA-GAVGV 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,485
Number of Sequences: 438
Number of extensions: 5632
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)