Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1175
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0652 + 4975091-4975585 33 0.25
05_04_0144 + 18389877-18390431 31 0.99
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 30 2.3
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 29 3.0
03_06_0217 - 32432590-32433495 29 3.0
11_01_0797 - 7006491-7006531,7006717-7006963 28 7.0
08_02_0292 - 15420378-15421229 28 7.0
07_03_0025 + 12587868-12588429,12591820-12592031,12592212-125926... 28 7.0
07_01_0053 + 413900-414119,414241-414254 28 7.0
03_01_0476 - 3660327-3661261,3661401-3661668 28 7.0
11_06_0710 - 26492093-26493460 28 9.2
06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149... 28 9.2
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126... 28 9.2
>01_01_0652 + 4975091-4975585
Length = 164
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/35 (51%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 100 CGAGGGLVPA--HDARRHGREAAPAHRHLVGRGGR 198
CGAGGG P RHG EAA R G+GGR
Sbjct: 17 CGAGGGWAPTRRRPEGRHG-EAAGKRREAAGKGGR 50
>05_04_0144 + 18389877-18390431
Length = 184
Score = 31.1 bits (67), Expect = 0.99
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +1
Query: 100 CGAGGGLVPAHDARRHGREAAPAHRHLVGRGGR 198
C GG PA ARRHG HR G G R
Sbjct: 12 CDGSGGRRPARPARRHGGGGRRRHRRCGGGGWR 44
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 58 AGQERSESETQR*PCGAGGGLVPAHDA--RRHGREAAPAHRHLVGRGG 195
A Q R E+ TQR GGL +A RRHG A V RGG
Sbjct: 614 ANQRRGEAATQRGGSDPAGGLRRRGEAAKRRHGEAANRWREEAVRRGG 661
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +1
Query: 103 GAGGGLVPAHDARRHGREAAPAHRHLVGRGGR---HPAGAP 216
G G G VP H R G+ H GRGG+ HP G P
Sbjct: 120 GGGRGWVPQHGGRGGGQYQGRGG-HYQGRGGQGSHHPGGGP 159
>03_06_0217 - 32432590-32433495
Length = 301
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 103 GAGGGLVPAHDARRHGREAAP 165
G GGGL+PAH HG A P
Sbjct: 136 GVGGGLLPAHAYAGHGYAAVP 156
>11_01_0797 - 7006491-7006531,7006717-7006963
Length = 95
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/19 (68%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Frame = -1
Query: 146 WR--RASCAGTSPPPAPQG 96
WR RAS A TSPPP P G
Sbjct: 29 WRGSRASAAATSPPPDPAG 47
>08_02_0292 - 15420378-15421229
Length = 283
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = +1
Query: 103 GAGGGLVPAHDARRHGREAAPAHRHLVGRGGRHPAGA 213
GAGGG RR GRE A R V R AGA
Sbjct: 203 GAGGGSRRRRTERRRGREQAEEGRAAVAAPRRSRAGA 239
>07_03_0025 +
12587868-12588429,12591820-12592031,12592212-12592603,
12592608-12592965
Length = 507
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 46 GAREAGQERSESETQR*PCGAGGGLVPAHDARRHGREAAPAHRHLVGRGG 195
G+ + G + S + PC A L P H R R +PA R +G G
Sbjct: 278 GSTKPGVRPNPSRPRSAPCSAARSLSPRHVTRTKIRGDSPAQRLTMGELG 327
>07_01_0053 + 413900-414119,414241-414254
Length = 77
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/19 (68%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Frame = -1
Query: 146 WR--RASCAGTSPPPAPQG 96
WR RAS A TSPPP P G
Sbjct: 20 WRSSRASAAATSPPPDPAG 38
>03_01_0476 - 3660327-3661261,3661401-3661668
Length = 400
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 22 ETSQTRQEGAREAGQERSESETQR*PCGAGGGLVPAHDARRHGREAAPAHRHLVGR 189
ET++ +E A E G E+ + + + + A DA HG+E HRH+ G+
Sbjct: 337 ETAEAAREKANE-GYEKVKEKAKEKVEEVKERVTGADDAADHGKEKKHHHRHVDGK 391
>11_06_0710 - 26492093-26493460
Length = 455
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 140 GATGVKPRQRIVISSDEEDDTPQARRTLSKLRSSVND 250
GA K ++ SSDEEDD +++ SK +SS +D
Sbjct: 205 GAKKKKKKKSKGKSSDEEDDEKPKKKSKSKSKSSSSD 241
>06_01_0193 -
1491710-1491739,1492194-1492319,1492631-1492766,
1493048-1493112,1493213-1493305,1493433-1493498,
1493763-1493843,1493977-1494032,1494692-1494780,
1495340-1495425,1495531-1495647,1496109-1496254,
1496665-1496725,1496831-1496914,1497028-1497135,
1497286-1497388,1497802-1497845,1498100-1498584,
1499417-1499603,1500150-1500362,1501066-1501323
Length = 877
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +1
Query: 28 SQTRQEGAREAGQERSESETQR*PCGAGGGLVPAHDARRHGREAAPAHRHL 180
S+TRQ R + R +R CG GGG DAR E A HL
Sbjct: 341 SRTRQRRRRSRRRRR-----RRKTCGGGGGCGRGGDARGRPAELAKVFSHL 386
>01_07_0238 +
42209407-42209964,42210039-42210561,42212577-42212665,
42212981-42213191,42213265-42213446,42213573-42213812,
42214691-42214878,42215230-42215323,42215407-42215463,
42215552-42215686,42216460-42216525,42216745-42216858,
42217849-42218010,42218093-42218221,42218323-42218424,
42219428-42219504,42219600-42219957
Length = 1094
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 97 PCGAGGGLVPAHDARRHGREAAPAHRHLV 183
P A G V A R+GR AP HRHL+
Sbjct: 27 PLEAFSGDVCAALTARYGRSTAPQHRHLL 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,008,574
Number of Sequences: 37544
Number of extensions: 238348
Number of successful extensions: 927
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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