Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1175
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    32   0.51 
Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical pr...    31   0.88 
Z70756-4|CAA94788.1|  290|Caenorhabditis elegans Hypothetical pr...    31   0.88 
AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +1

Query: 46  GAREAGQER--SESETQR*PCGAGGGLVPAHDARRHGREAAPAHR-HLVGRGGRHPAGAP 216
           G R  G  R  S S +     G GG   P H   RHGR  + +H     G GGRH  G P
Sbjct: 331 GGRHGGHGRHGSRSGSPGGRHGHGGRHGPPHCPGRHGRHGSRSHSPRGHGHGGRH--GPP 388

Query: 217 H 219
           H
Sbjct: 389 H 389



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +1

Query: 61  GQERSESETQR*PCGAGGGLVPAHDARRHGREAAPAHRHLVGRG-GRH 201
           G+  S S + R   G GG   P H   RHG    P H H  GR   RH
Sbjct: 367 GRHGSRSHSPR-GHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRH 413


>Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.6 protein.
          Length = 290

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 103 GAGGGLVPAHDARRHGREAAPAHRHLVGRGGRHPAGAP 216
           G  G   PA DA   G+  AP H    G+GG+   G P
Sbjct: 164 GPAGPQGPAGDAGAPGQAGAPGHPGAPGQGGQRSRGTP 201


>Z70756-4|CAA94788.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.4 protein.
          Length = 290

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 103 GAGGGLVPAHDARRHGREAAPAHRHLVGRGGRHPAGAP 216
           G  G   PA DA   G+  AP H    G+GG+   G P
Sbjct: 164 GPAGPQGPAGDAGAPGQAGAPGHPGAPGQGGQRSRGTP 201


>AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK355.4 protein.
          Length = 485

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 419 FKVFFH*LFYCNTHARSSTNTSILT 345
           F +  H  FYC T+  S TN S+LT
Sbjct: 113 FNISMHMYFYCETYGLSITNNSLLT 137


>Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical
           protein C09G5.4 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 103 GAGGGLVPAHDARRHGREAAPAHRHLVGRGGRHPAGAP 216
           G  G   PA DA   G+  AP +    GRGG+   G P
Sbjct: 168 GPAGPRGPAGDAGAPGQVGAPGNPGQAGRGGQRSHGLP 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,479,450
Number of Sequences: 27780
Number of extensions: 214863
Number of successful extensions: 632
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)