Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1174
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...   246   4e-66
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    27   2.4  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   3.1  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    26   5.5  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   5.5  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   7.2  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   7.2  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    25   9.5  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score =  246 bits (601), Expect = 4e-66
 Identities = 132/273 (48%), Positives = 179/273 (65%), Gaps = 20/273 (7%)
 Frame = +3

Query: 3   LTISSPLEAHKSNTLVYHMVGVDVGFENPMFACLEIDYEEADSDPTGEAAQKTQQTLTFY 182
           LTISSPLEAHK+N + +H++G+D G+ NP+FA LE+DY E D D T EA   +++ L++Y
Sbjct: 158 LTISSPLEAHKANNICFHLIGLDTGYANPIFAALEVDYSEIDHDSTREAFTSSEKVLSYY 217

Query: 183 ELDLGLNHVVRKYSEPLEEHANFLITVPGGNDGPSGVLICSENYLTYKNLGDQ-HDIRCP 359
           ELDLGLNHVV+++S+ ++ ++  LI VPGGNDGPSG L+ S  +++Y++L    H I  P
Sbjct: 218 ELDLGLNHVVKRWSKVVDRNSYMLIPVPGGNDGPSGTLVISNGWISYRHLQKAFHQI--P 275

Query: 360 IPRRR----NDLDDP---------ERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITIET 500
           I RR+    N +  P           G + V +  HK K  FF+L QT  GD+ K+TIE 
Sbjct: 276 ILRRQAASANAISTPWNQVNSNSANDGPLIVSAVLHKMKGSFFYLLQTGDGDLLKLTIEH 335

Query: 501 D-EDMVTEIKLKYFDTVPVATSMCVLKTGFLFVACEFGNHYLYQIAHLGDEDDEPEFSS- 674
           D +  V E++LKYFDTVP+A  + +LKTGFLFVA EFGNH LYQ  +LG +DDE E +S 
Sbjct: 336 DGQGNVVELRLKYFDTVPLAVQLNILKTGFLFVATEFGNHQLYQFENLGIDDDELEITSL 395

Query: 675 ---AMPLEEG-DTFFFAPRPLRNLVLVDEMDSL 761
              A   E G     F  R L+NL LV+E+ SL
Sbjct: 396 DFQAQDNEVGTKNVHFGVRGLQNLSLVEEIPSL 428


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 207 VVRKYSEPLEEHANFLITVPGGNDGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDL 383
           +VR+  + L + A+ LIT P   D      +  +N L +  L D+  I C +PR R+ +
Sbjct: 265 LVRRCLKMLPDDASALITTP--EDAMLTNPVLDKNPLIHNVLTDRSIISCSLPRDRSPI 321


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 78  IQHQHQPCDKLVCLTCEL 25
           I H   PCD + CL CEL
Sbjct: 529 ISHSLGPCDLMECLLCEL 546


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 237 EHANFLITVPGGNDGPSGVLICSENYL 317
           EH  FL+   G    P GV+ C+  YL
Sbjct: 265 EHPLFLLYTSGSTGKPKGVVHCTGGYL 291


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 703 NVSPSSRGIAELNSGSSSSSPKCAI*YK*WLPNSQATNKNPVLRTHIDVATGTV 542
           N  PSS GI+  N   S ++   +I    ++ N   T++NP   + ++ A+  V
Sbjct: 109 NKEPSSPGISPSNDSQSQNTNHTSISANPYVNNPSHTSRNPDSGSSLNTASHEV 162


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 213 RKYSEPLEEHAN-FLITVPGGNDGPSGVLICSENYLTYKNL 332
           RK S+PLE HA+ F +  P G D    VL  +    T   L
Sbjct: 187 RKVSQPLESHASAFAVIQPEGVDHEVQVLALASRLPTGSKL 227


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 450 FLAQTEQGDIFKI-TIETDEDMVTEIKLKYFDTVPVATSMCVLKTGFLFVACEFGNHYLY 626
           ++   E G ++K   + TDE +  E  L+      +A+ +  L    LFV   F N  L 
Sbjct: 279 YIVADESGMLYKFKALFTDETVSME--LEKLGESSIASCLIALPDNHLFVGSHFNNSVLL 336

Query: 627 QI 632
           Q+
Sbjct: 337 QL 338


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 300 CSENYLTYKNLGDQHDIRCPIPRRRNDLDDP 392
           C +NYL Y+ L    DIR  + R  N    P
Sbjct: 526 CRKNYLNYQTLRQALDIRTHLVRFLNKFSIP 556


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +3

Query: 306 ENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFK 485
           +N+ T  +  D+  +  P P  R    D    +    S T   KS+FFF+   +Q   F 
Sbjct: 28  QNHSTPNHASDELSVNDPSPLSRGLQSDVNSNISRNISNTFFKKSIFFFVYYCKQALEFI 87

Query: 486 ITI 494
            T+
Sbjct: 88  STV 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,559
Number of Sequences: 5004
Number of extensions: 74971
Number of successful extensions: 217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)