Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1174
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 312 2e-85
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 31 1.1
05_05_0226 + 23442971-23443857,23444209-23446324 30 1.9
11_01_0605 + 4821363-4823246 30 2.5
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 29 5.7
08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220... 28 7.6
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 7.6
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 28 7.6
04_03_0626 + 18135267-18136304 28 10.0
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 312 bits (767), Expect = 2e-85
Identities = 146/259 (56%), Positives = 195/259 (75%), Gaps = 2/259 (0%)
Frame = +3
Query: 3 LTISSPLEAHKSNTLVYHMVGVDVGFENPMFACLEIDYEEADSDPTGEAAQKTQQTLTFY 182
LTISSPLEAHKSNTL + + +D GF+NP+FA +E++Y E+D DPTG+AA++ Q+ LTFY
Sbjct: 167 LTISSPLEAHKSNTLTFSLTALDCGFDNPVFAAIELEYAESDRDPTGQAAEQAQKHLTFY 226
Query: 183 ELDLGLNHVVRKYSEPLEEHANFLITVPGGNDGPSGVLICSENYLTYKNLGDQHDIRCPI 362
ELDLGLNHV RK SEP++ AN L+TVPGG DGPSG+L+C +N++ Y+N G ++R I
Sbjct: 227 ELDLGLNHVSRKASEPIDNGANLLVTVPGGGDGPSGLLVCCDNFVLYRNQG-HPEVRAVI 285
Query: 363 PRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITIETDEDMVTEIKLKYFD 542
PRR DL ERG++ V +ATH+ KS+FFFL QTE GDIFK+ +E D VTE+++KYFD
Sbjct: 286 PRRA-DL-PAERGVLIVAAATHRQKSLFFFLLQTEYGDIFKVDLEHSNDTVTELRIKYFD 343
Query: 543 TVPVATSMCVLKTGFLFVACEFGNHYLYQIAHLG-DEDDEPEFSSAMPLEEG-DTFFFAP 716
T+PV +++CVL++GFLF A EFGNH LYQ +G D D E ++ M +EG FF P
Sbjct: 344 TIPVTSAICVLRSGFLFAASEFGNHALYQFRDIGRDVDVESSSATLMETDEGFQPVFFQP 403
Query: 717 RPLRNLVLVDEMDSLSPIL 773
R L+NL +DE++SL PI+
Sbjct: 404 RALKNLYRIDEIESLMPIM 422
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 9 ISSPLEAHKSNTLVYHMVGVDVGFENPMFACLEIDYEEADSDP 137
ISS +E S ++VYH + V+ EN F + + E++++P
Sbjct: 1138 ISSAMEPPDSQSIVYHGMEVNGSLENGKFVIADDEASESEAEP 1180
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 30.3 bits (65), Expect = 1.9
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +3
Query: 558 TSMCVLKTGFLFVA--CEFGNHYLYQIAHLGDEDDE----PEFSSAMPLEEGDTFFFAPR 719
+S +L T VA C GN Y+YQ+ LG+ED + P F S LE+G
Sbjct: 322 SSRIILTTTIQSVANMCSHGNGYVYQMNTLGEEDSKELAFPGFRSP-ELEQGSASLLGKC 380
Query: 720 PLRNLVLVDEMDSL 761
L LV D L
Sbjct: 381 DGLPLALVSVSDYL 394
>11_01_0605 + 4821363-4823246
Length = 627
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 521 FSDHIFISFYSYFENITLFSLCQKEKHG 438
FSDHI + + Y N+TL LC+ HG
Sbjct: 214 FSDHIPMGLFRY-GNLTLLDLCRNNLHG 240
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 12 SSPLEAHKSNTLVYHMVGVDVGFENPMFACLEIDYEEADSDP 137
S+P + K N L Y+M+G EN + +E+D+ + P
Sbjct: 444 STPPQPGKRNFLAYNMLGSITTIENEGHSHVEVDFHDTGRGP 485
>08_02_1102 +
24319569-24319917,24320120-24321496,24321819-24322001,
24322147-24322460,24322515-24322631,24323057-24323313,
24323504-24323684,24323802-24324074,24324535-24324729
Length = 1081
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 402 MIFVCSATHKTKSMFFFLAQTEQGDIFKITIETDEDMVTEIKLKYFD 542
++F C+ KT S+ F + + DIF+ D V + + FD
Sbjct: 613 VVFTCNGKSKTSSIKFQTLEPQWNDIFEFDAMDDPPSVMNVHVYDFD 659
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 105 EIDYEEADSDPTGEAAQKTQQTLTFYELD 191
+I++EEADSD + QK Q F +D
Sbjct: 4190 KIEFEEADSDVRSDVDQKAIQNFQFEHMD 4218
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -3
Query: 772 NIGDKESISSTSTKFLKGLGAKKNVSPSSRGIAELNSGSSSSS 644
N G E +S+ +T+ GA K+ SPS+ G ++ SSSSS
Sbjct: 162 NGGGDEVLSAVTTED-SSAGAAKSCSPSAEGHSKRKPSSSSSS 203
>04_03_0626 + 18135267-18136304
Length = 345
Score = 27.9 bits (59), Expect = 10.0
Identities = 21/83 (25%), Positives = 34/83 (40%)
Frame = +3
Query: 417 SATHKTKSMFFFLAQTEQGDIFKITIETDEDMVTEIKLKYFDTVPVATSMCVLKTGFLFV 596
S KT + F A T+ G + K+ D D+V E L+ V S C++ G
Sbjct: 221 SKERKTLTSMFKEAMTD-GTLIKLL---DSDIVNEDNLRVIHQAAVLASQCLIIPGTARP 276
Query: 597 ACEFGNHYLYQIAHLGDEDDEPE 665
+ L Q+A + +P+
Sbjct: 277 EMRYVAEQLQQLAFADEVQQDPQ 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,987,910
Number of Sequences: 37544
Number of extensions: 440559
Number of successful extensions: 1016
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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