Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1174
         (804 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein.      518   e-147
BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b, sub...   515   e-146
AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SA...   513   e-145
BC009780-1|AAH09780.1|  275|Homo sapiens SF3B3 protein protein.       198   3e-50

>D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein.
          Length = 1253

 Score =  518 bits (1279), Expect = e-147
 Identities = 237/259 (91%), Positives = 250/259 (96%)
 Frame = +3

Query: 3   LTISSPLEAHKSNTLVYHMVGVDVGFENPMFACLEIDYEEADSDPTGEAAQKTQQTLTFY 182
           LTISSPLEAHK+NTLVYH+VGVDVGFENPMFACLE+DYEEAD+DPTGEAA  TQQTLTFY
Sbjct: 188 LTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLTFY 247

Query: 183 ELDLGLNHVVRKYSEPLEEHANFLITVPGGNDGPSGVLICSENYLTYKNLGDQHDIRCPI 362
           ELDLGLNHVVRKYSEPLEEH NFLITVPGG+DGPSGVLICSENY+TYKN GDQ DIRCPI
Sbjct: 248 ELDLGLNHVVRKYSEPLEEHGNFLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPI 307

Query: 363 PRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITIETDEDMVTEIKLKYFD 542
           PRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKIT+ETDEDMVTEI+LKYFD
Sbjct: 308 PRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFD 367

Query: 543 TVPVATSMCVLKTGFLFVACEFGNHYLYQIAHLGDEDDEPEFSSAMPLEEGDTFFFAPRP 722
           TVPVA +MCVLKTGFLFVA EFGNHYLYQIAHLGD+D+EPEFSSAMPLEEGDTFFF PRP
Sbjct: 368 TVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRP 427

Query: 723 LRNLVLVDEMDSLSPILAC 779
           L+NLVLVDE+DSLSPIL C
Sbjct: 428 LKNLVLVDELDSLSPILFC 446


>BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b,
           subunit 3, 130kDa protein.
          Length = 1217

 Score =  515 bits (1271), Expect = e-146
 Identities = 236/259 (91%), Positives = 249/259 (96%)
 Frame = +3

Query: 3   LTISSPLEAHKSNTLVYHMVGVDVGFENPMFACLEIDYEEADSDPTGEAAQKTQQTLTFY 182
           LTISSPLEAHK+NTLVYH+VGVDVGFENPMFACLE+DYEEAD+DPTGEAA  TQQTLTFY
Sbjct: 152 LTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLTFY 211

Query: 183 ELDLGLNHVVRKYSEPLEEHANFLITVPGGNDGPSGVLICSENYLTYKNLGDQHDIRCPI 362
           ELDLGLNHVVRKYSEPLEEH NFLITVPGG+DGPSGVLICSENY+TYKN GDQ DIRCPI
Sbjct: 212 ELDLGLNHVVRKYSEPLEEHGNFLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPI 271

Query: 363 PRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITIETDEDMVTEIKLKYFD 542
           PRRRNDLDDPERGMIFVCSATHKTKSMFF LAQTEQGDIFKIT+ETDEDMVTEI+LKYFD
Sbjct: 272 PRRRNDLDDPERGMIFVCSATHKTKSMFFSLAQTEQGDIFKITLETDEDMVTEIRLKYFD 331

Query: 543 TVPVATSMCVLKTGFLFVACEFGNHYLYQIAHLGDEDDEPEFSSAMPLEEGDTFFFAPRP 722
           TVPVA +MCVLKTGFLFVA EFGNHYLYQIAHLGD+D+EPEFSSAMPLEEGDTFFF PRP
Sbjct: 332 TVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRP 391

Query: 723 LRNLVLVDEMDSLSPILAC 779
           L+NLVLVDE+DSLSPIL C
Sbjct: 392 LKNLVLVDELDSLSPILFC 410


>AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SAP
           130 protein.
          Length = 1217

 Score =  513 bits (1266), Expect = e-145
 Identities = 235/259 (90%), Positives = 248/259 (95%)
 Frame = +3

Query: 3   LTISSPLEAHKSNTLVYHMVGVDVGFENPMFACLEIDYEEADSDPTGEAAQKTQQTLTFY 182
           LTISSPLEAHK+NTLVYH+VGVDVGFENPMFACLE+DYEEA +DPTGEAA  TQQTLTFY
Sbjct: 152 LTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEAGNDPTGEAAANTQQTLTFY 211

Query: 183 ELDLGLNHVVRKYSEPLEEHANFLITVPGGNDGPSGVLICSENYLTYKNLGDQHDIRCPI 362
           ELDLGLNHVVRKYSEPLEEH NFLITVPGG+DGPSGVLICSENY+TYKN GDQ DIRCPI
Sbjct: 212 ELDLGLNHVVRKYSEPLEEHGNFLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPI 271

Query: 363 PRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITIETDEDMVTEIKLKYFD 542
           PRRRNDLDDPERGMIFVCSATHKTKSMFFF AQTEQGDIFKIT+ETDEDMVTEI+LKYFD
Sbjct: 272 PRRRNDLDDPERGMIFVCSATHKTKSMFFFWAQTEQGDIFKITLETDEDMVTEIRLKYFD 331

Query: 543 TVPVATSMCVLKTGFLFVACEFGNHYLYQIAHLGDEDDEPEFSSAMPLEEGDTFFFAPRP 722
           TVPVA +MCVLKTGFLFVA EFGNHYLYQIAHLGD+D+EPEFSSAMPLEEGDTFFF PRP
Sbjct: 332 TVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRP 391

Query: 723 LRNLVLVDEMDSLSPILAC 779
           L+NLVLVDE+DSLSPIL C
Sbjct: 392 LKNLVLVDELDSLSPILFC 410


>BC009780-1|AAH09780.1|  275|Homo sapiens SF3B3 protein protein.
          Length = 275

 Score =  198 bits (482), Expect = 3e-50
 Identities = 90/98 (91%), Positives = 95/98 (96%)
 Frame = +3

Query: 3   LTISSPLEAHKSNTLVYHMVGVDVGFENPMFACLEIDYEEADSDPTGEAAQKTQQTLTFY 182
           LTISSPLEAHK+NTLVYH+VGVDVGFENPMFACLE+DYEEAD+DPTGEAA  TQQTLTFY
Sbjct: 152 LTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLTFY 211

Query: 183 ELDLGLNHVVRKYSEPLEEHANFLITVPGGNDGPSGVL 296
           ELDLGLNHVVRKYSEPLEEH NFLITVPGG+DGPSGVL
Sbjct: 212 ELDLGLNHVVRKYSEPLEEHGNFLITVPGGSDGPSGVL 249


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,200,600
Number of Sequences: 237096
Number of extensions: 2530881
Number of successful extensions: 9157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9157
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)