Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1174
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...   411   e-115
U42830-5|AAC48280.2|  437|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical pr...    30   1.7  
X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein ...    30   1.7  
U88169-10|AAB42232.2|  231|Caenorhabditis elegans Coenzyme q (ub...    30   2.2  
AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical pr...    29   5.1  

>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 203 protein.
          Length = 1220

 Score =  411 bits (1011), Expect = e-115
 Identities = 185/256 (72%), Positives = 218/256 (85%)
 Frame = +3

Query: 3   LTISSPLEAHKSNTLVYHMVGVDVGFENPMFACLEIDYEEADSDPTGEAAQKTQQTLTFY 182
           LTISSPLEAHK +TL Y MVG+DVGFENP FACLE DYE+AD+DPTGEAA++TQQTLTFY
Sbjct: 153 LTISSPLEAHKHHTLCYAMVGIDVGFENPTFACLEFDYEDADNDPTGEAAKRTQQTLTFY 212

Query: 183 ELDLGLNHVVRKYSEPLEEHANFLITVPGGNDGPSGVLICSENYLTYKNLGDQHDIRCPI 362
           ELDLGLNHVVRKY+EPL +  N LI VPGGNDGPSGV++C ENYL YKNLGDQ DIRCPI
Sbjct: 213 ELDLGLNHVVRKYAEPLNDPGNLLIAVPGGNDGPSGVIVCCENYLVYKNLGDQPDIRCPI 272

Query: 363 PRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITIETDEDMVTEIKLKYFD 542
           PRRRN+LDD +R M+ + +ATHKTK+M+FFL Q E GDIFK+T+ETDED+V+E+KLKYFD
Sbjct: 273 PRRRNELDDADRTMLIIATATHKTKNMYFFLVQAENGDIFKVTLETDEDLVSEMKLKYFD 332

Query: 543 TVPVATSMCVLKTGFLFVACEFGNHYLYQIAHLGDEDDEPEFSSAMPLEEGDTFFFAPRP 722
           TVP A ++C+LK+GFLFVA EFGNH LYQIA LG+ DD+ EFSSAM   E D  FF P  
Sbjct: 333 TVPPANALCILKSGFLFVAAEFGNHELYQIASLGEGDDD-EFSSAMGFGENDAAFFEPHE 391

Query: 723 LRNLVLVDEMDSLSPI 770
           L++L+ +D MDSLSP+
Sbjct: 392 LKSLIPIDSMDSLSPL 407


>U42830-5|AAC48280.2|  437|Caenorhabditis elegans Hypothetical
           protein C53B7.7 protein.
          Length = 437

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = -2

Query: 581 SFKNTH*CCHWYSVKVFQLYFSDHIFISFYSYFENI 474
           +F+ +H CCH++   +F  Y   + FI++ ++++ +
Sbjct: 85  NFRRSHICCHFFCKLLFIYYDYQYRFINYVTFYDGM 120


>Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical
           protein ZK455.7 protein.
          Length = 1268

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -2

Query: 587 KSSFKNTH*CCHWYS--VKVFQL-YFSDHIFISFYSYFENITLFSLCQKEKH 441
           +S ++N      W+S  +K+F L YF   + +   SYF N  L++LC++  H
Sbjct: 78  ESQYQNGTINMPWFSSEIKMFCLRYFYLGVALFLCSYFANSCLYTLCERRLH 129


>Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical
           protein ZK455.7 protein.
          Length = 1268

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -2

Query: 587 KSSFKNTH*CCHWYS--VKVFQL-YFSDHIFISFYSYFENITLFSLCQKEKH 441
           +S ++N      W+S  +K+F L YF   + +   SYF N  L++LC++  H
Sbjct: 78  ESQYQNGTINMPWFSSEIKMFCLRYFYLGVALFLCSYFANSCLYTLCERRLH 129


>X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein C
           protein.
          Length = 1254

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -2

Query: 587 KSSFKNTH*CCHWYS--VKVFQL-YFSDHIFISFYSYFENITLFSLCQKEKH 441
           +S ++N      W+S  +K+F L YF   + +   SYF N  L++LC++  H
Sbjct: 78  ESQYQNGTINMPWFSSEIKMFCLRYFYLGVALFLCSYFANSCLYTLCERRLH 129


>U88169-10|AAB42232.2|  231|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 4 protein.
          Length = 231

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 465 EQGDIFKITIETDEDMVTEIKLKYFDTVPVATSMCVLKTGFLF 593
           E  D   I +E   +M+ E+ +KYF+ +     MCV  TG +F
Sbjct: 131 ETHDFTHIALEQKTNMLGEVTVKYFEGIQYGLPMCV--TGGIF 171


>AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical
           protein F17A9.4 protein.
          Length = 457

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 153 QKTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLITVPGGNDGPSGVLI 299
           Q+T QT T+   D      V +Y E L+++  F+ ++   N    GVL+
Sbjct: 401 QQTNQTPTYGISDFSNEETVNRYKEALKDYTVFMKSMASQNKPIHGVLV 449


>Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical
           protein E03H4.7 protein.
          Length = 624

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +3

Query: 57  MVGVDVGFENPMFACLEIDYEEADSDPTGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLE 236
           M+   +G  NP +  +  D EE ++    E   +T   +  Y L LGL  V    + PL+
Sbjct: 205 MIVYTIGLPNPQYQVINQDIEECENLIDSEEVPETPCNMYSYFLLLGLFTVA---AFPLK 261

Query: 237 EHANFLITVPGGNDGPSGVLICSE-NYLTYKNL 332
            H   LI  P    G    ++ SE N+L    L
Sbjct: 262 LHP--LIVRPLVTVGTGSFILISEGNFLVSNKL 292


>Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical
           protein F13E6.4 protein.
          Length = 442

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 751 ISSTSTKFLKGLGAKKNVSPSSRGIAELNSGSSSSSP 641
           IS +  K+ K    KKN  PSS    + N GSS+ SP
Sbjct: 37  ISCSEKKYEKNQNQKKNPLPSSYYHQKRNPGSSAHSP 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,872,774
Number of Sequences: 27780
Number of extensions: 422665
Number of successful extensions: 1041
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)