Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1174
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.82 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   4.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 657 HHLHHPNVLSDISSGCQIHKPQTKIQF*EH 568
           HHLHH  VL   S       P  + ++ EH
Sbjct: 74  HHLHHHQVLYQQSPYLMYENPDEEKRYQEH 103


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -3

Query: 289 PEGPSFPPGTVMRKFACSSKGSEYFLTT*FKPRSNS*NVK 170
           P GP   P +V++    S     Y L   F PRS    +K
Sbjct: 399 PRGPGGVPTSVIQAATSSVSDDLYLLELGFPPRSKKNKLK 438


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 712 AKKNVSPSSRGIAELNSGSSSSSPKCA 632
           A+++ SPS  G +  +SGSS+S+   A
Sbjct: 56  AQQHNSPSPTGSSPQHSGSSASTSPAA 82


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 108 IDYEEADSDPTGEAAQK---TQQTLTFYELDLGLNH 206
           IDY    ++ TG    K    +Q L ++  D+GLNH
Sbjct: 195 IDYYLLAANYTGWYLTKHNVPEQRLNYFTEDVGLNH 230


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 108 IDYEEADSDPTGEAAQK---TQQTLTFYELDLGLNH 206
           IDY    ++ TG    K    +Q L ++  D+GLNH
Sbjct: 195 IDYYLLAANYTGWYLTKHNVPEQRLNYFTEDVGLNH 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,911
Number of Sequences: 438
Number of extensions: 5082
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)