Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1173
         (790 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62892-1|AAC47284.1| 3351|Drosophila melanogaster retinoid- and ...    29   7.2  
AE014135-185|AAF59387.2| 3351|Drosophila melanogaster CG11064-PA...    29   7.2  

>U62892-1|AAC47284.1| 3351|Drosophila melanogaster retinoid- and fatty
            acid-bindingglycoprotein protein.
          Length = 3351

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = -2

Query: 579  DNIITQY*NL----VMIFCTFDCLRMDRLFEIPRRQSVFCKIKKFRMLSENLWEFGMDFL 412
            +N+  QY N     + I   FD  +MD   EI R Q +   I K+     +  ++ ++  
Sbjct: 1246 ENVEIQYKNKQVGGIKIMSNFDVNKMDVDVEISREQKIGSIIVKYESNQRHAQDYSLEAS 1305

Query: 411  TKISSYFFQFVHTC 370
             KI+ +    +  C
Sbjct: 1306 AKINKHSIDVISKC 1319


>AE014135-185|AAF59387.2| 3351|Drosophila melanogaster CG11064-PA
            protein.
          Length = 3351

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = -2

Query: 579  DNIITQY*NL----VMIFCTFDCLRMDRLFEIPRRQSVFCKIKKFRMLSENLWEFGMDFL 412
            +N+  QY N     + I   FD  +MD   EI R Q +   I K+     +  ++ ++  
Sbjct: 1246 ENVEIQYKNKQVGGIKIMSNFDVNKMDVDVEISREQKIGSIIVKYESNQRHAQDYSLEAS 1305

Query: 411  TKISSYFFQFVHTC 370
             KI+ +    +  C
Sbjct: 1306 AKINKHSIDVISKC 1319


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,317,658
Number of Sequences: 53049
Number of extensions: 702557
Number of successful extensions: 1428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)