Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1172
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    29   0.43 
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   9.3  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   9.3  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +3

Query: 336 KKKIHSEIRLQSVHFDCR-EIYGKYIFVNNVVAFFPT*VDSL--ERLYQ 473
           KK +H EIRL + H+D    I+ K + + + V+     + SL  +RLYQ
Sbjct: 141 KKIVHGEIRLDTFHYDLNAPIHAKLLTIGSSVSPIRFTLSSLNWKRLYQ 189


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 198 PHPSNRNALLLHGGNRQGGGTYP 130
           PHP N   +LL G N Q   + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 333 IKKKIHSEIRLQSVHFDCREIYGKYIFVNNVVAFFPT 443
           IK++  ++  L S  F  R  YG Y+FVN    FF T
Sbjct: 448 IKQQEEAKKSLWSKRFS-RFYYGHYVFVNTCHNFFLT 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,352
Number of Sequences: 5004
Number of extensions: 51935
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)