Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1172
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664           29   2.4  
11_02_0006 + 7274148-7274986,7275636-7277586                           27   9.7  
07_03_0712 - 20878272-20879633                                         27   9.7  
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    27   9.7  

>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
          Length = 582

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = -2

Query: 219 RV*LQQLPHPSNRNALLLHGGNRQGGGTYPCGLTRGPTTSNYANYHFAG 73
           R+ LQ LP P   +    HGG   GG     G T+    S  ANY F G
Sbjct: 392 RLSLQSLPDPMFHHQQHRHGGGGGGGN----GTTQQALFSGAANYSFGG 436


>11_02_0006 + 7274148-7274986,7275636-7277586
          Length = 929

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -3

Query: 461 LKAINLGRKKSNNIINKYIFSIYFTTVKVH*LQPNF--AMNLFFYCLDAWTSSQPYGVK 291
           L AINL  +K + + N +   +   T+++H L  +   +++LF YC+D    S   GVK
Sbjct: 49  LMAINLALEKYSGMEN-FDVQVKAWTIEMHELAYDMEDSIDLFSYCIDHEPVSTTMGVK 106


>07_03_0712 - 20878272-20879633
          Length = 453

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 320 WTSSQPYGVKWLLEPIDIYNVNAPPTLR 237
           WT   P G +   +P  +YN ++ PT R
Sbjct: 117 WTQCAPCGERCFKQPSPLYNPSSSPTFR 144


>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 480 RTTLREQKFGITYLKLIPRDLVY*IFF**S*K*DHFKG*IPNFKLIP 620
           + T+ +   GI+     PR ++  IFF  S   DHF+  I NF+L+P
Sbjct: 484 KNTIEKVLGGISVALSSPRLVIPAIFFGLSTLSDHFQNSILNFELVP 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,087,062
Number of Sequences: 37544
Number of extensions: 329060
Number of successful extensions: 718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)