Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1172
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    29   2.1  
U50300-6|AAC48109.1|  642|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical p...    28   6.5  
U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 356 FAMNLFFYCLDAWTSSQPYGVKWLLEPIDIYNVNAP 249
           F   L +YCL A     P   KWL EPI  ++ +AP
Sbjct: 609 FIAYLTYYCLVAMEFISPIQTKWLAEPI-YHDFDAP 643


>U50300-6|AAC48109.1|  642|Caenorhabditis elegans Hypothetical
           protein R03H4.1 protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 437 KKSNNIINKYIFSIYFTTVKVH*LQPNF 354
           ++   I+  Y+F+I+ T + +H   PNF
Sbjct: 65  RRFRRILTLYLFTIFLTVIMIHLYLPNF 92


>U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical
           protein ZK328.7b protein.
          Length = 1098

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 456 LERLYQRYRTTLREQKFGITYLKLIPRDLVY 548
           +E L +  R  L+   FG+ YL L   DL+Y
Sbjct: 440 IENLVEMLRNQLQSFPFGLDYLSLFSSDLLY 470


>U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical
           protein ZK328.7a protein.
          Length = 1332

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 456 LERLYQRYRTTLREQKFGITYLKLIPRDLVY 548
           +E L +  R  L+   FG+ YL L   DL+Y
Sbjct: 440 IENLVEMLRNQLQSFPFGLDYLSLFSSDLLY 470


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,217,655
Number of Sequences: 27780
Number of extensions: 288673
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)