Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1171
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    31   0.24 
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   4.0  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   5.3  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 75  TSTYSCAKFIHGAFLEIAYPKLLNKL 152
           T+ YSC   IH A  E+++ KLL+KL
Sbjct: 574 TTGYSCVMHIHTAVEEVSFAKLLHKL 599


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 16  LHGRNRQDGGAYFGGLQDASPALTLVLNLFTER 114
           LHG  R+ GGAY  GL  +   +  VL+ FT R
Sbjct: 848 LHGEIREKGGAYGAGL--SYSGIDGVLSFFTYR 878


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 410 GGRAHSPLGVKWLLEPIDIYN 472
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,846
Number of Sequences: 5004
Number of extensions: 61511
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)