Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1168
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0281 - 20334578-20334961,20335859-20336005,20336088-203361...    33   0.35 
02_04_0585 - 24088344-24089366,24089833-24090075,24090305-240906...    28   7.4  
02_04_0510 + 23558111-23559613                                         28   7.4  

>01_05_0281 -
           20334578-20334961,20335859-20336005,20336088-20336141,
           20336391-20336555,20337331-20337855
          Length = 424

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 576 AIPIRR*IRSAVLVRVRLRKFGRQPLERVESSITSQGH 463
           ++PIRR   + VL    +R+FGR P  RV     S GH
Sbjct: 137 SVPIRRTTEADVLRASSVRRFGRAPTARVRRDSVSGGH 174


>02_04_0585 -
           24088344-24089366,24089833-24090075,24090305-24090655,
           24090736-24090823,24091178-24091275,24091813-24092025,
           24092150-24092245,24093124-24093195,24093909-24094067
          Length = 780

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 49  QNFLGTVTGDIVNELPPEEFDVKIGETVAVSIASND 156
           +  L TV G I+N+L PE+FD+  G+ +   I + D
Sbjct: 205 ERVLKTVKG-ILNKLTPEKFDLLKGQLIEAGITTAD 239


>02_04_0510 + 23558111-23559613
          Length = 500

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 479 ILDSTRSRGCLPNFLSLTLTRTAL 550
           +LDS  S+GC PN ++ T+  T+L
Sbjct: 276 VLDSMGSQGCHPNVITYTMIMTSL 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,852,984
Number of Sequences: 37544
Number of extensions: 331407
Number of successful extensions: 627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)