Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1164
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.40 
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   2.8  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   3.7  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    25   6.5  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   8.5  

>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 248 TRLVFYVLSLYLYITIRCLLAAALIASMMTEVVTGFVTMF 367
           T  +++ L+L L++  R + + + + S   E+VTGF++ F
Sbjct: 153 TPALYFTLTLILFLPRRNIYSISTLPSQRFEIVTGFLSPF 192


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 239 ISDTRLVFYVLSLYLYITIRCLLAAALIASMMTEVVTGFVTMFVADDDWYRY 394
           ++ T L+ ++L      T+ CL     I S +   + G V  +V +D  +RY
Sbjct: 361 LTATTLIIFILYFATAQTLPCLALFYGITSSIGPSIHGLVAAYVPNDKPHRY 412


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +3

Query: 165 LRVLSQCVRSKDVEYVRIWNPTTILLVTHASSFMC*AYIYISQSDVCLLQ 314
           +++L  C+R  ++    IW    +  +     F+    +Y  QS + LLQ
Sbjct: 133 IKILQDCLRRPNISNGGIWVQWNLEEINQLKKFLSFRKLYPRQSFISLLQ 182


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -1

Query: 384  QSSSATNMV-TNPVTTSVIMEAIKAAASRHLIV 289
            +SSS+T++V +NPV T V +E+ K   S+  +V
Sbjct: 1021 RSSSSTSLVQSNPVKTVVSLESYKFTTSKISLV 1053


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 230 HYPISDTRLVFYVLSLYLYITIRCLLAAALIASMMTEVVTG--FVTMFVA 373
           H+ +  + L    +  Y+   I CLLAAAL +S       G  FV  F+A
Sbjct: 118 HWTVGVSILEIAYVVCYVLFAIVCLLAAALTSSPYKWAYYGFSFVGYFIA 167


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 414 PYRTRLRYRYQSSSATNMVTNP 349
           PY  + RY + S   TN+++ P
Sbjct: 208 PYVNQFRYHFMSQKQTNVLSKP 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,495,081
Number of Sequences: 5004
Number of extensions: 20978
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)