Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1163
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   2.4  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    25   3.2  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    25   4.2  
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...    24   5.5  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   5.5  
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...    24   5.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    23   9.6  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    23   9.6  

>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 21  KYPQACGWTLVFLLSPVWFPGKNRTTPSHPV 113
           ++P A GWT++  L+ + F     T   +P+
Sbjct: 671 RFPNAYGWTVIKHLTEILFEQNTSTAYMNPI 701


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = -2

Query: 116 IHGMRWSGPILT 81
           +HGM++SGPIL+
Sbjct: 285 VHGMKYSGPILS 296


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 7   NTHFSNTLRLAAGLLYFYYHLCG-SRVRIGPLHLI 108
           +T   + L+L  GL+YF Y   G S   + P+H +
Sbjct: 332 DTFAEHKLQLVGGLVYFLYPPLGLSEALLHPVHTV 366


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 94  VLFLPGNHTGDNKNTRVQPQ 35
           +L L GN   DNK TR+ P+
Sbjct: 64  ILELAGNAARDNKKTRIIPR 83


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 263 LILPARTQDCVSQYKSKTVVLNYSDPAL 180
           +++PA T+    Q+ +KT  L Y DP L
Sbjct: 295 VLIPAYTESARWQFPTKTGYLVYWDPEL 322


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 94  VLFLPGNHTGDNKNTRVQPQ 35
           +L L GN   DNK TR+ P+
Sbjct: 64  ILELAGNAARDNKKTRIIPR 83


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 7   NTHFSNTLRLAAGLLYFYYHLCGSRVRIGPLHLIPWMS*EATKGINVNEH 156
           N +  +   L+  L     H    R+R  P+H  P  S ++T  +N N +
Sbjct: 494 NPYMPSPSLLSGSLANSSEHSSSPRLRGSPIHNQPVSSSKSTASLNTNNN 543


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 272 ISYLILPARTQDCVSQYKSKTVV 204
           +SY ++PAR+QD       K V+
Sbjct: 613 VSYFVVPARSQDQTFLESQKDVI 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,794
Number of Sequences: 5004
Number of extensions: 27253
Number of successful extensions: 53
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)