Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1163
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core alpha-6-...    29   0.64 
AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl trans...    29   0.64 
AY204177-1|AAO39181.1|  385|Caenorhabditis elegans nuclear recep...    27   4.5  
AL022272-2|CAA18351.1|  385|Caenorhabditis elegans Hypothetical ...    27   4.5  
U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core
           alpha-6-fucosyltransferase protein.
          Length = 559

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 168 HLT*MLINIYSLSRLLRHPRDEMEWSYSYPGTTQVIIKIQESS 40
           H+T   I  ++  R++   RD   W YS  G T V  K+ + S
Sbjct: 210 HVTYCAITAFATQRMMVLKRDGSSWKYSSHGWTSVFKKLSKCS 252


>AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl
           transferase protein 8 protein.
          Length = 559

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 168 HLT*MLINIYSLSRLLRHPRDEMEWSYSYPGTTQVIIKIQESS 40
           H+T   I  ++  R++   RD   W YS  G T V  K+ + S
Sbjct: 210 HVTYCAITAFATQRMMVLKRDGSSWKYSSHGWTSVFKKLSKCS 252


>AY204177-1|AAO39181.1|  385|Caenorhabditis elegans nuclear receptor
           NHR-68 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  PVWFPGKNRTTPSHPVDVVRGD*GNKC 146
           P+ +  +N+ T  HP++ + GD  N C
Sbjct: 83  PIGYTKRNKKTLRHPMNELSGDESNSC 109


>AL022272-2|CAA18351.1|  385|Caenorhabditis elegans Hypothetical
           protein H12C20.3 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  PVWFPGKNRTTPSHPVDVVRGD*GNKC 146
           P+ +  +N+ T  HP++ + GD  N C
Sbjct: 83  PIGYTKRNKKTLRHPMNELSGDESNSC 109


>U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical
           protein F36H5.8 protein.
          Length = 648

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 189 VRVVQYHRLTLVLRHTILCSRR*YKVRYLLNDV 287
           V+   Y R+ +VL HT L   R  +V++ LND+
Sbjct: 497 VQTTDYQRM-VVLNHTKLVETRTNRVKFSLNDL 528


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -1

Query: 123  LRHPRDEMEWSYSYPGTTQVIIKIQESSRK 34
            +R+PRD M+W+  +  + ++ +  QE+  +
Sbjct: 2081 VRNPRDPMKWTVPFYNSQRLALTAQETKER 2110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,181,723
Number of Sequences: 27780
Number of extensions: 157529
Number of successful extensions: 306
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)