Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1159
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    64   3e-11
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   3.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   4.1  
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    26   5.4  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   9.5  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
 Frame = +1

Query: 19  LSDRLYFATLKTGYKPKPTRNSKYFHIEDEIVYENFYFDFGPYHLCHLYQFCKKLNEELD 198
           L D+LY+ +L    K +   +  +F I+DE++Y  FY DFGP ++ HL +F   ++  + 
Sbjct: 15  LEDKLYYTSLSQPPKAELYPHMHFFTIDDELIYNPFYHDFGPLNVSHLIRFAVIVHGIMG 74

Query: 199 RN----PKKKIVYYTSNNENLRLNAAYLIGSYQV 288
           ++      K IV Y+S +  LR NAA L+  Y V
Sbjct: 75  KHRQAKKSKAIVLYSSTDTRLRANAACLLACYMV 108


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 261 SVSYWQLSGLFIVKDDLRSSYNFKLDFYW 347
           ++ YW ++G       +RS++ +K D YW
Sbjct: 647 TLGYWDVTGSAEFNVIIRSAFKYKADDYW 675


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 465 RVASKE*NYTCYLVCLN*FPSKCSHNYRTLTVQFYRRAYSSK 340
           RV S + ++T YL+  +  PS C H  + +TV ++   + SK
Sbjct: 187 RVTSTDASFTEYLLSTDPIPSSCIH--KIITVDYFSIYWISK 226


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 282 SGLFIVKDDLRSSYNFKLDFYWSTLVYRT 368
           SG+ ++   LR  +  K D YW   ++ T
Sbjct: 117 SGIIVMLTKLRERHRLKCDIYWPVELFET 145


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 579 HQNPLRSFKDLSLHRDIGTEKASLFY 656
           H NP+ + K    H     +K++LFY
Sbjct: 757 HPNPMTTLKRKGQHNSFSYDKSTLFY 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,427
Number of Sequences: 5004
Number of extensions: 57388
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)