Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1159
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1564 - 38276207-38276434,38276571-38276707,38277214-382776...    31   0.80 
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96...    30   2.5  
06_01_1092 + 8966584-8967053,8967737-8967854,8968030-8968253,896...    28   9.9  

>01_06_1564 -
           38276207-38276434,38276571-38276707,38277214-38277621,
           38277895-38278256,38278427-38278524,38278727-38278863,
           38279346-38279444,38279753-38280053
          Length = 589

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +1

Query: 46  LKTGYKPKPTRNSKYFH-IEDEIVYENFYFDFGPYHLCHLYQFCKKLNEELDRNPKKKIV 222
           L +G K +P   S   H + DE + E  Y  +G YHL      C ++N E   +  + + 
Sbjct: 509 LISGRKAEPLVESLALHELIDERIAET-YDTYGLYHLARAAYLCVRINPEQRPSMGEVVR 567

Query: 223 YYTSNNENLR 252
              S NE++R
Sbjct: 568 LIESENEHIR 577


>02_01_0135 +
           967172-967229,968316-968657,968936-969015,969063-969698,
           969819-971527,971563-972514,972821-973273,974303-974497
          Length = 1474

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 100 EDEIVYENFYFDFGPYHLCHLYQFCKKLNEELDRNPKKKIVYYTSNN 240
           +D +    F ++F P HL H + +C    ++   N KK +  + S N
Sbjct: 437 DDILAILKFSYEFLPVHLQHCFSYCSLFPKDHKFNGKKLVRAWISQN 483


>06_01_1092 +
           8966584-8967053,8967737-8967854,8968030-8968253,
           8968352-8968588,8969122-8969275,8969356-8969438,
           8969573-8969687,8969837-8969909,8970005-8970147
          Length = 538

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 183 QRGVGQESEEENSLLYEQQ*EFKVERSVSYWQLSGLFIV 299
           + G G E EEE     E++  ++  R  S W+++G  +V
Sbjct: 43  EAGFGVEEEEEEGEEEEEEVRWRERRVASLWRVAGALLV 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,273,343
Number of Sequences: 37544
Number of extensions: 309583
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)