Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1158
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    33   0.047
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    30   0.33 
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    28   1.3  
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    27   3.1  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   5.4  
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...    25   9.5  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   9.5  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 44  FHKTITVYADGYELTANLKLFMEHLKQH--QKKLDVKCSRCVLRFLNLGHLK 193
           FH  + ++AD Y++TAN K +   LK H  + K+  KC +   ++ N  H +
Sbjct: 82  FHYALDLFADEYKVTANDKHYDYRLKSHRIKDKITTKC-KGTTKYFNSRHFE 132


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 47  HKTITVYADGYELTANLKLFME--HLKQHQKKLDV-KCSRCVLRFLNLGHLKDHQVRHHT 217
           H+ I  Y+  +E     + F +   L+ H ++  V  CS C  +F    HL+ H V H T
Sbjct: 169 HEKIISYSCPHESCVGHEGFEKWSQLQNHIREAHVPSCSICGRQFKTAAHLRHHVVLHQT 228

Query: 218 TVPD 229
           T+ +
Sbjct: 229 TLEE 232


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 76  LRTDGQLEVVHGAFEAASKEARRQMFPV 159
           L++ G LE+  GAFEA ++  R  + PV
Sbjct: 292 LKSHGSLEIDRGAFEAITRTNRAGLLPV 319


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 592 QQVCQHICTDGGAVGAHAVSGRAGARRVLQAVR 494
           + +C+H+C D G V     S    + R+ Q+VR
Sbjct: 17  ESICEHLCLDIGRVELSKFSNGETSVRIKQSVR 49


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 176 NLGHLKDHQVRHHTTVPDAVPLCTEEHLITKPKTKARPPVKD 301
           +LGHL+  ++    T PDA      E  IT+P +    P  D
Sbjct: 418 SLGHLES-KLAPSITFPDACDALEAEECITRPGSATNTPQSD 458


>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 188 LKDHQVRHHTTVPDAVPLCT--EEHLITKPKTKARPPVKDCANHNIVETYEQMTLV 349
           L + + R   ++PD V +    EE  ITKP T    PV+  A        EQ T V
Sbjct: 192 LPEPKTRQKKSLPDIVVVLDPKEEEPITKPYTVINQPVEAAAAAGQEVVAEQETAV 247


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 160 CAQIFKSWSPKRPPSTSSHHRAGCC 234
           C+Q  KS    + PS  S  + GCC
Sbjct: 240 CSQEKKSCCSSKKPSCCSQEKKGCC 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,900
Number of Sequences: 5004
Number of extensions: 41831
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)