Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1158
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 31 0.81
07_03_1406 + 26343915-26346032 31 1.4
04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547 30 2.5
02_05_0361 + 28285994-28286063,28286341-28286393,28286528-282865... 29 5.7
01_06_1226 - 35518981-35519295,35519876-35520745 29 5.7
12_01_0335 - 2583476-2583493,2583919-2583965,2584151-2584274,258... 28 7.5
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 28 7.5
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185... 28 7.5
10_08_0642 - 19525774-19526554,19526657-19527075 28 7.5
03_05_0675 + 26630466-26632070 28 7.5
09_04_0194 + 15504780-15506114 28 9.9
01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287... 28 9.9
>01_07_0124 + 41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 330 YVSTMLWLAQSFTGGRALVLGLVMRCSSVQSGT 232
++S LWL G LV+G +++C V+SG+
Sbjct: 942 HLSGKLWLTSVLIGSVGLVIGAILKCIPVESGS 974
>07_03_1406 + 26343915-26346032
Length = 705
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 158 CVLRFLNLGHLKDHQVRHHTTVPDAVPLCTEEHLITKPKTKARPPVKDCAN 310
C LR L LK H TV +PLC + H++ + K +K C N
Sbjct: 448 CALRLLQKVGLKPD----HVTVVSVLPLCNQHHMLIQGKELHAYVIKYCIN 494
>04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547
Length = 751
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -2
Query: 399 LLSSGASHSRQSMPSGSTSVICSYVSTMLWLAQSFTGGRALVLGLVMRCSSVQSGTAS 226
L +SG S + + S SY+ T+LW A S+ VLGL+ S++ S S
Sbjct: 260 LFASGEWRSLRGEMNAFRSGQFSYLMTLLWAAVSWQVANIGVLGLIFEVSALFSNVIS 317
>02_05_0361 +
28285994-28286063,28286341-28286393,28286528-28286588,
28286825-28287912
Length = 423
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -2
Query: 399 LLSSGASHSRQSMPSGSTSVICSYVSTMLWLAQSFTGGRALVLGLVMRCSSVQSGTAS 226
L +SG + Q S SYV T+LW A S+ V+GL+ SS+ S S
Sbjct: 307 LFASGEWMTLQGEMHAFQSGKLSYVMTLLWTAISWQVASVGVVGLIFVVSSLFSNVIS 364
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +3
Query: 609 LPTVLRRKLVLTSYEPMNPSPLKNRSRSP 695
L T+L+R L+L+S P+ SPL +RSR+P
Sbjct: 55 LSTILQR-LLLSSPAPILRSPLSSRSRAP 82
>12_01_0335 -
2583476-2583493,2583919-2583965,2584151-2584274,
2584421-2584665,2585281-2585404,2585424-2585456
Length = 196
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 104 FMEHLKQHQKKLDVKCSRCVLRF 172
F H+ +H K VKC C+L F
Sbjct: 135 FGRHMSRHHSKATVKCKDCLLAF 157
>12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 312 WLAQSFTGGRALVLGLVMRCSSVQSGTASGT 220
WL G +L++G++++C V SG S T
Sbjct: 995 WLLSVGLGSISLIVGVILKCIPVGSGETSAT 1025
>11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,
1856342-1856500,1856692-1856863,1856965-1857263,
1857539-1857844
Length = 1017
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 312 WLAQSFTGGRALVLGLVMRCSSVQSGTASGT 220
WL G +L++G++++C V SG S T
Sbjct: 973 WLLSVGLGSISLIVGVILKCIPVGSGETSAT 1003
>10_08_0642 - 19525774-19526554,19526657-19527075
Length = 399
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 570 QIC*HTCWRANTRLPTVLRRKLVLTSYEP 656
Q+C H WRA+T LP+ RR ++ + P
Sbjct: 32 QVCAH--WRASTALPSATRRPWLVAAIRP 58
>03_05_0675 + 26630466-26632070
Length = 534
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 655 GSYDVSTSFLLRTVGSLVFARQQVCQHICTDGGAVGAHA 539
GS DV+ L+ +GSL R V Q + DGG G A
Sbjct: 440 GSSDVAVPHLVTILGSLEMQRDMVMQVLEGDGGGGGETA 478
>09_04_0194 + 15504780-15506114
Length = 444
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 263 TKPKTKARPPVKDCANHNIVETYEQMT 343
T+PK A P V+D A V T++Q T
Sbjct: 38 TRPKAVAMPVVRDGATRQYVATFQQRT 64
>01_06_1315 +
36226262-36226533,36227946-36228060,36228710-36228752,
36229953-36230329,36230330-36230481,36230591-36230838,
36230919-36231047,36231130-36231739,36231842-36232086,
36232195-36232325
Length = 773
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 290 PVKDCANHNIVETYEQMTLVLPEG 361
PV D AN+N+V+ E+ T+ +P G
Sbjct: 695 PVNDPANYNLVDPVERNTVSVPTG 718
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,198,760
Number of Sequences: 37544
Number of extensions: 323263
Number of successful extensions: 1097
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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