Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1158
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    29   0.066
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    26   0.47 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.62 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    25   0.82 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.6  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 28.7 bits (61), Expect = 0.066
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 113 HLKQHQKKLDVKCSRCVLRFLNLGHLKDHQVRHHTTVPDAVPLC 244
           H++ H  +    CS C  +F+ + +L+ H   H    P A  LC
Sbjct: 28  HMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYACELC 71


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +2

Query: 113 HLKQHQKKLDVKCSRCVLRFLNLGHLKDHQVRHHTTVPDAVPLCTE 250
           H + H K+   KC  C   F + G L  H   H    P    +C++
Sbjct: 138 HRRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSK 183



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = +2

Query: 113 HLKQHQKKLDVKCSRCVLRFLNLGHLKDHQVRHHTTVPDAVPLC 244
           H++ H  +   KC+ C   F+  G L  H   H    P     C
Sbjct: 166 HMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKAC 209



 Score = 22.6 bits (46), Expect = 4.4
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +2

Query: 74  GYELTANLKLFMEHLKQHQKKLDVKCSRCVLRFLNLGHLKDHQVRHHTTVPDAVPLCTE 250
           G+  +  LK+   H + H  +    C  C   F     LK HQV H+        LC E
Sbjct: 212 GFTCSKQLKV---HTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHE 267


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 199 PSTSSHHRAGCCPALH*RTSHHQ 267
           P ++ H R G C  LH  T+H++
Sbjct: 394 PDSARHQRIGGCNGLHTTTAHNR 416


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 12/45 (26%), Positives = 15/45 (33%)
 Frame = +2

Query: 113 HLKQHQKKLDVKCSRCVLRFLNLGHLKDHQVRHHTTVPDAVPLCT 247
           HL+ H      KC +C    +N   L  H   H          CT
Sbjct: 7   HLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCT 51



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/36 (27%), Positives = 13/36 (36%)
 Frame = +2

Query: 92  NLKLFMEHLKQHQKKLDVKCSRCVLRFLNLGHLKDH 199
           N  +   HLK H      +C+ C         LK H
Sbjct: 28  NKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLH 63


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +2

Query: 47  HKTITVYADGYELTANLKLFMEHLKQHQKKLDVKCSRCVLRFLNLGHLK 193
           +K + +Y DG  L ++          + +   +   RC L+F + G+ K
Sbjct: 107 NKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGSFGYTK 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,675
Number of Sequences: 438
Number of extensions: 2798
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)