Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1153
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine rec...    28   4.5  
AC006769-11|AAF60586.1|  340|Caenorhabditis elegans Seven tm rec...    28   6.0  
AC006645-4|AAF39845.2|  340|Caenorhabditis elegans Seven tm rece...    28   6.0  

>Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical
           protein K05C4.5 protein.
          Length = 656

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 65  IANVHDVTIHQVSRMLVSLERQ*KIIWPQSLDFC 166
           I   HDVTI+++S M+  + R  K++   +LD C
Sbjct: 356 IGTCHDVTIYKISPMVKKINR--KVVKTATLDVC 387


>U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein274 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 204 NNPY*TFALKMHIWTYYFCTFDLMTFSYE*IYRYYAIYFV 323
           N  Y  F ++ H W ++  TF ++ +    +Y Y A Y+V
Sbjct: 116 NRYYLLFGVRGHWWRHFRITFLVLNYVIACVYFYPAYYYV 155


>AC006769-11|AAF60586.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 154 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = -2

Query: 227 CKSSIWVIMTRYGMLSVKESNKSLEIGAILFF----IAFLGRRAYGLLDGW*RHGRWQCQ 60
           C    W+       L+VK+   +L I   + F    IAF G + YG +     HG+ +  
Sbjct: 183 CTFPYWLPTVENQGLTVKDIMANLAITISMAFPILIIAFCGTKTYGKVKNLTEHGKNEYS 242

Query: 59  RQSQVAAYS*ILSASLV 9
           ++ Q+  Y  +++  ++
Sbjct: 243 KRLQLQLYKALVAQVII 259


>AC006645-4|AAF39845.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 267 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = -2

Query: 227 CKSSIWVIMTRYGMLSVKESNKSLEIGAILFF----IAFLGRRAYGLLDGW*RHGRWQCQ 60
           C    W+       L+VK+   +L I   + F    IAF G + YG +     HG+ +  
Sbjct: 183 CTFPYWLPTVENQGLTVKDIMANLAITISMAFPILIIAFCGTKTYGKVKNLTEHGKNEYS 242

Query: 59  RQSQVAAYS*ILSASLV 9
           ++ Q+  Y  +++  ++
Sbjct: 243 KRLQLQLYKALVAQVII 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,483,279
Number of Sequences: 27780
Number of extensions: 268392
Number of successful extensions: 553
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)