Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1153
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   7.1  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   7.1  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +3

Query: 219  TFALKMHIWTYYFCTFDLMTFSYE*IYRYY 308
            T  L++H+W    C     T  Y  I  ++
Sbjct: 1514 TLVLRLHVWPDNGCPILYFTIQYRPINEFH 1543


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +3

Query: 219  TFALKMHIWTYYFCTFDLMTFSYE*IYRYY 308
            T  L++H+W    C     T  Y  I  ++
Sbjct: 1510 TLVLRLHVWPDNGCPILYFTIQYRPINEFH 1539


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 486 SVGNFILLRPRNFRKKGYKVFASRINI*IIPTLNDTYC 373
           S+ N  +    N++    K++ + INI  IP     YC
Sbjct: 317 SLSNKTIHNNNNYKNYNKKLYYNIINIEQIPVPVPVYC 354


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 551 SNKKTLHILP 580
           SNKKT H+LP
Sbjct: 61  SNKKTRHMLP 70


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 505 LLYILYKCGKFHTP 464
           L+Y + +CGKF  P
Sbjct: 72  LMYQIQQCGKFKEP 85


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 373 AISVIKCWYNLY 408
           A +V+ CW N+Y
Sbjct: 65  AAAVMSCWMNVY 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,983
Number of Sequences: 438
Number of extensions: 3214
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)