Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1152
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    31   0.24 
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    27   3.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.9  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    27   3.9  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    27   3.9  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   6.9  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    26   6.9  

>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -3

Query: 718  VDGPIADEIPFAFPVCLVIVSSRKSMLTYVANEKFIFVAHDPPDIKWFMKPIDI*QPIL 542
            +DGP  D + F    C V++   ++M  Y      IFV     +++   +P+D+ +PIL
Sbjct: 1148 LDGPEEDIVCFNNSKCHVVIE--RNMFAYTTGMYNIFVRIFNEELQLLSQPVDLDEPIL 1204


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 211 KVFSIYNNQCTLFAKKGGNPGP 276
           KVFSI NNQ TL     G+ GP
Sbjct: 34  KVFSIENNQQTLLETLRGHSGP 55


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 533  SHVENGLSNVNGLHKPLNIWWVMSNKNKLFISYIS 637
            SHV+N + N+ G      I  +++ K+KLF ++++
Sbjct: 968  SHVDNSILNIEGDMSTDRIDLILNEKSKLFETHLA 1002


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 709 PIADE-IPFAFPVCLVIVSSRKSMLTYVANEKFIFVAHDPPDIKWFMK 569
           P+A+E IP++  V    V+++  +   V N+KF+ + H   D  W  K
Sbjct: 486 PLANEFIPWSLEVEKQPVTTKLKVPNLVRNDKFVRLWHKKDDTFWVPK 533


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = -3

Query: 628 ANEKFIFVAHDPPDIKWFMKPIDI*QPILDMR*KFRKFGNAF*DQDVLKAFLKRLNDGTD 449
           A+  FI + HDP   +   KP+   +P  D+R + ++   +  ++ +++   + L D  +
Sbjct: 396 ADFNFIQIDHDPITNQETRKPVKFSKPTKDIRSRLKEVPTSTDEEFIIR---QELMDLLE 452

Query: 448 SCLE 437
            CLE
Sbjct: 453 KCLE 456


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 726 LIMSTGLLLMKFHLHSPYA 670
           +I +T  +L +F LHSPYA
Sbjct: 739 MIATTSCMLAQFALHSPYA 757


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 446 RVGAIIQSLQKSFQYVLVLKRITKLSKLSSHVENGLSNVNG 568
           +VGA+++ LQK  QYV + K    +   SS+ E   ++++G
Sbjct: 44  QVGALVEILQKGLQYVELEKHY--VDNHSSNEEASKTSIDG 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,158
Number of Sequences: 5004
Number of extensions: 53670
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)