Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1152
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0194 - 27368563-27370956                                         30   1.8  
08_02_1326 - 26158279-26159712                                         28   7.2  
12_02_0437 - 19084990-19087695                                         28   9.5  

>01_06_0194 - 27368563-27370956
          Length = 797

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +1

Query: 421 EILERILSTSRCHHSISSEKLSIRPGLKTHYQTFETFISCREWVVKC 561
           E L++ L   RCH S+ S     R  L T          C EWVV C
Sbjct: 586 ESLDKYLFGERCHESLLSWSQRYRIALGTARGLAYLHHECLEWVVHC 632


>08_02_1326 - 26158279-26159712
          Length = 477

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 352 VFEVYYPQLLSHKKFLSNALLPLEILERILSTSRCHHSISSEKLSIRPG 498
           +F V+YP LLSH   LS+A        R  S S  H S+     ++  G
Sbjct: 56  LFTVHYPSLLSHSFHLSSAAAAANGKHRAASRS-SHRSLLGSSAAVAYG 103


>12_02_0437 - 19084990-19087695
          Length = 901

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 387 QKIPVKRFTSSRDFRAYSKHESVPSFNLFRKAFNTSWS*NALPNFR 524
           +++PV +    + F+  +  + + SF LF K  + SW  NA  NFR
Sbjct: 539 RRVPVHK--GGQHFQPSASWQQLRSFLLFDKHVSISWICNASSNFR 582


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,491,801
Number of Sequences: 37544
Number of extensions: 313657
Number of successful extensions: 697
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)