Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1150
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   0.55 
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    27   1.7  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    26   2.2  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    26   2.9  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   3.9  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   5.1  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    24   8.9  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    24   8.9  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    24   8.9  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 367  LTHTTKNHSLFTHRHRVYPSLLDTMFSSIHRLSSSSN-PSLATKGST 230
            ++H T   S FT  H    +L  T  +S    SSSS  P L+TK S+
Sbjct: 3725 VSHATSTSSSFTTSHLPTNTLASTFDNSQSIFSSSSGVPGLSTKSSS 3771


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 376 VPILTHTTKNHSLFTHRHRVYPSLLDTMFSSIH-RLSSSSNPSLA-TKGS 233
           VP +  T+ +HS    + R +PS      +S H  L SS+ PS A T GS
Sbjct: 273 VPAVPLTSASHSSSDGKSRKHPSPYKPYLNSSHDTLGSSTRPSSADTAGS 322


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -1

Query: 421 RFSKFIRSHIVSVYTVPILTHTTKNHSLFTHRHRVYPSLLDTMFSSIHRLSSSSNPSLA 245
           +FS  +R  +  +    + T   K   L  H   +YP++ D +  S+  +S+  NPS +
Sbjct: 145 KFSVDLRPKVRKISIQVLQTLKQKYDGLLPH---LYPAIFDELQRSLSEVSNMDNPSFS 200


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 400 SHIVSVYTVPILTHTTKNHSLFTHRHRVYPSLLDTMFSSIHRLSSSSNPSLATKGS 233
           SH+       +    T +  +F  R   YP LL   F+++ +L+  +N   A KG+
Sbjct: 213 SHLTQPKRALLKESNTGDKDIFKPR---YPQLLSCRFTTLSKLAPINNSKSAPKGT 265


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -1

Query: 289 SSIHRLS-SSSNPSLATKGSTSKLTLR-HSPLSFSPDLL 179
           SS++ L  S+S+PS    GS+  +    ++PL FS DLL
Sbjct: 374 SSLNLLEISASSPSYVPSGSSFSVRANLYNPLDFSIDLL 412


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 367 LTHTTKNHSLFTHRHRVYPSLLDTMFSSIHRLSSSSNPSLATKGST 230
           LT   +  + FT   ++YP + DT +  I   +  S+P LA  G+T
Sbjct: 409 LTKLKQAMARFTTNTQMYPLVYDTTYKGIISTAGYSSP-LADYGNT 453


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 11  SSFFFLPNLIALRGHISVALTS 76
           S F FLP LIA++     A+TS
Sbjct: 463 SGFLFLPPLIAMQATFPPAMTS 484


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -2

Query: 360 IRQKIILCSHTGTV-YIHHYW 301
           I+ +I+LC HT T+ ++H +W
Sbjct: 386 IKNEIVLC-HTVTIEFLHQFW 405


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 319 VYPSLLDTMFSSIHRL-SSSSNPSLATKGSTSKLTLRHSPLSFS 191
           + PS++ T  SS + + SSSS PS ++  S+S  +   S  S S
Sbjct: 132 IAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSS 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,254
Number of Sequences: 5004
Number of extensions: 33486
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)