Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1150
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0584 - 25220371-25222917                                         27   8.7  
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818...    27   8.7  
05_01_0203 + 1459600-1460010                                           27   8.7  

>11_06_0584 - 25220371-25222917
          Length = 848

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = -1

Query: 367 LTHTTKNHSLFTHRHRVYPSLLDTMFSSIHRLSSSSN-----PSLATKGSTSKLTLRHSP 203
           L H  K  +LF+H     PS L+++    ++  +++N     P + +    SK+TLRHS 
Sbjct: 654 LDHKEKATTLFSH-----PSKLESLNLKCYKGKNNNNNYNIPPWIISLQKLSKITLRHSL 708

Query: 202 LS 197
           LS
Sbjct: 709 LS 710


>07_03_1783 + 29480987-29481165,29481526-29481685,29481767-29481862,
            29481948-29482062,29482175-29482337,29482536-29482707,
            29483924-29484013,29484137-29484598,29484675-29485268,
            29485486-29485554,29485810-29485902,29486432-29486677,
            29487277-29487417,29487748-29487828,29487911-29487973,
            29488059-29488166,29488303-29488383,29488474-29488521,
            29488979-29489053,29489973-29490068,29490156-29490236,
            29490295-29490402,29490989-29491033,29491119-29491202,
            29491379-29491482,29491581-29491728
          Length = 1233

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 430  PVDRFSKFIRSHIVSVYTVPILTHT--TKNHSLFTHRHRVYPSLLDTMFSSIHR 275
            P D  S+ + S +    T+  L     TK HSL  H   +Y SL      ++HR
Sbjct: 859  PKDGGSENLSSSVADSQTLMSLYFALCTKKHSLLRHVFAIYGSLPQAAKQAVHR 912


>05_01_0203 + 1459600-1460010
          Length = 136

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 225 LLVEPFVASDGFDEDDNR*ILENIVSSNDGYTRC 326
           L   P    D  D+DD   ++ ++VS+ DG  RC
Sbjct: 67  LATSPLFLQDD-DDDDGENVIGDLVSAEDGSCRC 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,862,436
Number of Sequences: 37544
Number of extensions: 201981
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)